miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 5602 0.66 0.389821
Target:  5'- cUCGagGCCCCCCccucuaaccccuuuGcuGCGGCgCGACGAGu -3'
miRNA:   3'- -AGCg-CGGGGGG--------------Cc-CGCCGgGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 5997 0.71 0.175546
Target:  5'- cCGCuCCUCCCGcGGCgagGGCuCCGGCGAGc -3'
miRNA:   3'- aGCGcGGGGGGC-CCG---CCG-GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 6256 0.71 0.179663
Target:  5'- gCcCGCCCCgCgGGGCGGCCCGcCGc- -3'
miRNA:   3'- aGcGCGGGG-GgCCCGCCGGGCuGCuc -5'
23650 5' -68.2 NC_005261.1 + 8383 0.66 0.391367
Target:  5'- -aGgGCCCCCCcaagccgGGGCuGGgauucgaacccCCCGACGAc -3'
miRNA:   3'- agCgCGGGGGG-------CCCG-CC-----------GGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 8825 0.66 0.369351
Target:  5'- -gGCGCCCgCCGGGCaagggGGCggggacaggCCGugGGa -3'
miRNA:   3'- agCGCGGGgGGCCCG-----CCG---------GGCugCUc -5'
23650 5' -68.2 NC_005261.1 + 9974 0.68 0.306583
Target:  5'- cCGC-CCCCCCGGaCGcGCCuCGGCGcGg -3'
miRNA:   3'- aGCGcGGGGGGCCcGC-CGG-GCUGCuC- -5'
23650 5' -68.2 NC_005261.1 + 10223 0.7 0.22522
Target:  5'- cCGCGCCUgCCCaGGCgGGCCCGcgcacucgccgccGCGGGc -3'
miRNA:   3'- aGCGCGGG-GGGcCCG-CCGGGC-------------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 10555 0.69 0.25793
Target:  5'- gCGCGCCUgCCGGGCccacucuuuggGGCCgaaugCGACGuGa -3'
miRNA:   3'- aGCGCGGGgGGCCCG-----------CCGG-----GCUGCuC- -5'
23650 5' -68.2 NC_005261.1 + 11900 0.76 0.073919
Target:  5'- gCGCGCCCgCCgCGGGCccGGCCCGGCcGGc -3'
miRNA:   3'- aGCGCGGG-GG-GCCCG--CCGGGCUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 12294 0.68 0.281424
Target:  5'- cCGCGUCCgCCgCGGGCacgGGCgcguagCCGGCGGGc -3'
miRNA:   3'- aGCGCGGG-GG-GCCCG---CCG------GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 12345 0.66 0.369351
Target:  5'- gCGCgGCCgCCgCCGcGGCGGCaaCCGGCGc- -3'
miRNA:   3'- aGCG-CGG-GG-GGC-CCGCCG--GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 12503 0.71 0.192532
Target:  5'- aUG-GCCCCCCGGGCGaCCgCG-CGGGg -3'
miRNA:   3'- aGCgCGGGGGGCCCGCcGG-GCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 12735 0.89 0.008675
Target:  5'- cCGCcgGCCCCCUGGGCgGGCCCGGCGAGg -3'
miRNA:   3'- aGCG--CGGGGGGCCCG-CCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 12967 0.68 0.273607
Target:  5'- gCGCGCaCCCCagacagcgaGGGCcgcgacgccgauuaGGCCCG-CGAGc -3'
miRNA:   3'- aGCGCG-GGGGg--------CCCG--------------CCGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 13059 0.76 0.077648
Target:  5'- gCGCGCCCCugCCGGGCgcguccgccGGCCCGucgGCGGGc -3'
miRNA:   3'- aGCGCGGGG--GGCCCG---------CCGGGC---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 15262 0.67 0.326559
Target:  5'- cCGCGaUCgCCCC-GGCGGCgCCGcCGGGg -3'
miRNA:   3'- aGCGC-GG-GGGGcCCGCCG-GGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 15297 0.74 0.109235
Target:  5'- gUCGCGgCCUCCGGGUcgucggagccgGGCCCGuCGAa -3'
miRNA:   3'- -AGCGCgGGGGGCCCG-----------CCGGGCuGCUc -5'
23650 5' -68.2 NC_005261.1 + 17277 0.69 0.252313
Target:  5'- -aGUGCaCCCCCGa-CcGCCCGACGAGg -3'
miRNA:   3'- agCGCG-GGGGGCccGcCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 17345 0.67 0.333429
Target:  5'- cCGC-CCCgCCCGGGCaccccgcccaGGUCCGACu-- -3'
miRNA:   3'- aGCGcGGG-GGGCCCG----------CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 17554 0.66 0.369351
Target:  5'- gCGgGCCCgCCGuucggcGGUGGCCUugcgGGCGAGc -3'
miRNA:   3'- aGCgCGGGgGGC------CCGCCGGG----CUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.