miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 19864 0.68 0.306583
Target:  5'- cUCGCGCgagaCCCCGccGGCGGgCCCGuCGu- -3'
miRNA:   3'- -AGCGCGg---GGGGC--CCGCC-GGGCuGCuc -5'
23650 5' -68.2 NC_005261.1 + 20429 0.67 0.353946
Target:  5'- -gGCGCCuUCCCGGGgGggagcgcagacguGCCCGcGCGGGu -3'
miRNA:   3'- agCGCGG-GGGGCCCgC-------------CGGGC-UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 21799 0.69 0.25793
Target:  5'- cCGCaGCCgCCggCCGGGCcgGGCCCGcgGCGGGc -3'
miRNA:   3'- aGCG-CGG-GG--GGCCCG--CCGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 22491 0.67 0.333429
Target:  5'- -aGCGCgCCCgCGGGgGGCCacgCGGCGu- -3'
miRNA:   3'- agCGCGgGGG-GCCCgCCGG---GCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 22682 0.7 0.220703
Target:  5'- -aGUGCCgCCgGGGgacgGGCCCGGCGAc -3'
miRNA:   3'- agCGCGGgGGgCCCg---CCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 23490 0.66 0.361225
Target:  5'- gCGgGCCCgCCUGGGCaggcgcgGGCCCuGgGAGc -3'
miRNA:   3'- aGCgCGGG-GGGCCCG-------CCGGGcUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 23689 0.67 0.333429
Target:  5'- -aGCGCCCCCgacgCGaGGCccGCCCGGuCGGGu -3'
miRNA:   3'- agCGCGGGGG----GC-CCGc-CGGGCU-GCUC- -5'
23650 5' -68.2 NC_005261.1 + 23760 0.73 0.129233
Target:  5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3'
miRNA:   3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 23817 0.73 0.129233
Target:  5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3'
miRNA:   3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 23874 0.73 0.129233
Target:  5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3'
miRNA:   3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 24170 0.67 0.313136
Target:  5'- gUCGCaGgCUUCCGGGgGGUcgUCGGCGAGg -3'
miRNA:   3'- -AGCG-CgGGGGGCCCgCCG--GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 25150 0.66 0.384443
Target:  5'- -aGCGUCCucacuuCCCgGGGCGGCCgaGCGGGu -3'
miRNA:   3'- agCGCGGG------GGG-CCCGCCGGgcUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 28563 0.7 0.210942
Target:  5'- aCGCGgCCCgCCGGGCcgaGGCgcgcgagcgCCGGCGGGc -3'
miRNA:   3'- aGCGCgGGG-GGCCCG---CCG---------GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 29187 0.67 0.313136
Target:  5'- -gGCGCCCUcgCCGcGGC-GCCCGcGCGGGc -3'
miRNA:   3'- agCGCGGGG--GGC-CCGcCGGGC-UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 29287 0.66 0.361958
Target:  5'- cUGaCGCCCUCCGgcgaGGCcuGGCCCGGCa-- -3'
miRNA:   3'- aGC-GCGGGGGGC----CCG--CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 29780 0.69 0.241381
Target:  5'- aCGCGCCCauggccuaCCCGGaggcCGGCgCCGGCGGc -3'
miRNA:   3'- aGCGCGGG--------GGGCCc---GCCG-GGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 29852 0.67 0.326559
Target:  5'- cCGUGCUCgCCGGccgcGCGGCgCCGGCGc- -3'
miRNA:   3'- aGCGCGGGgGGCC----CGCCG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 30169 0.66 0.399938
Target:  5'- cCGCGCCCgCCGcGCuGCgCGcCGAGg -3'
miRNA:   3'- aGCGCGGGgGGCcCGcCGgGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 30280 0.69 0.263649
Target:  5'- gCGCGCCCgCCUGGacGCuGGCCCGcGCGc- -3'
miRNA:   3'- aGCGCGGG-GGGCC--CG-CCGGGC-UGCuc -5'
23650 5' -68.2 NC_005261.1 + 30759 0.67 0.313136
Target:  5'- cCGgGCCCUaguCCGGGCcggagcccGGCCgCGGCGGu -3'
miRNA:   3'- aGCgCGGGG---GGCCCG--------CCGG-GCUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.