miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 30937 0.69 0.229815
Target:  5'- gCGCaGCCCCUCGGGggcgggccucgaGGCCCGccGCGAc -3'
miRNA:   3'- aGCG-CGGGGGGCCCg-----------CCGGGC--UGCUc -5'
23650 5' -68.2 NC_005261.1 + 31444 0.66 0.379873
Target:  5'- -gGCGCCgCCCGgcgaggacgagcgccGGCGGCCUGAgUGGc -3'
miRNA:   3'- agCGCGGgGGGC---------------CCGCCGGGCU-GCUc -5'
23650 5' -68.2 NC_005261.1 + 32003 0.66 0.359761
Target:  5'- cCGUGCCgCCgcgcgaguaCCGGcagcgcgugcugccGCGGCUCGACGGGc -3'
miRNA:   3'- aGCGCGG-GG---------GGCC--------------CGCCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 32327 0.66 0.361958
Target:  5'- cCGCGgCgCCCGGcGUGGCCUggGACGcGGa -3'
miRNA:   3'- aGCGCgGgGGGCC-CGCCGGG--CUGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 32478 0.7 0.225726
Target:  5'- cUCGgGCUUCCCGgggccggcgacGGCGGCaUCGGCGGGg -3'
miRNA:   3'- -AGCgCGGGGGGC-----------CCGCCG-GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 32526 0.7 0.206202
Target:  5'- cCGCGCCCggcCCCGGcccCGGCCgCGGCGcGGg -3'
miRNA:   3'- aGCGCGGG---GGGCCc--GCCGG-GCUGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 33268 0.67 0.347485
Target:  5'- gUCGCGgCCCCCGuccccguccCGGUCCGugGGc -3'
miRNA:   3'- -AGCGCgGGGGGCcc-------GCCGGGCugCUc -5'
23650 5' -68.2 NC_005261.1 + 33482 0.67 0.313136
Target:  5'- cCGgGCCCgCUCGcGG-GGCCCG-CGAGc -3'
miRNA:   3'- aGCgCGGG-GGGC-CCgCCGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 33743 0.69 0.25793
Target:  5'- cUCGCGCggCgCCgGGGCcgGGCCCGcucGCGGGg -3'
miRNA:   3'- -AGCGCG--GgGGgCCCG--CCGGGC---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 33838 0.71 0.179663
Target:  5'- gCGgGCCCCCUggcgcuGGGCGGgCCGG-GAGg -3'
miRNA:   3'- aGCgCGGGGGG------CCCGCCgGGCUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 34332 0.69 0.241381
Target:  5'- -gGgGCCCCaaggggCCgGGGCGG-CCGACGGGg -3'
miRNA:   3'- agCgCGGGG------GG-CCCGCCgGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 34731 0.73 0.138801
Target:  5'- -gGCGCCCCCU-GGCGGCC--GCGGGg -3'
miRNA:   3'- agCGCGGGGGGcCCGCCGGgcUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 34948 0.68 0.293793
Target:  5'- gCGCGaCCCgggCCC-GGCGGCCUGGagaGAGa -3'
miRNA:   3'- aGCGC-GGG---GGGcCCGCCGGGCUg--CUC- -5'
23650 5' -68.2 NC_005261.1 + 35040 0.7 0.201554
Target:  5'- gCGCGCCgCCCuaacGGCGGCCgcgCGGCGGc -3'
miRNA:   3'- aGCGCGGgGGGc---CCGCCGG---GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 35077 0.67 0.332738
Target:  5'- cCGCGCCCCCucgcccuCGGagccGCGGUgagCGGCGAGc -3'
miRNA:   3'- aGCGCGGGGG-------GCC----CGCCGg--GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 35305 0.67 0.35467
Target:  5'- -aGCGCCgggCCGGGCuGCUCGGgGAGg -3'
miRNA:   3'- agCGCGGgg-GGCCCGcCGGGCUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 37744 0.67 0.353946
Target:  5'- gUCGC-CCCCCgCGGGCGccgcgccgcccaaGCgCCGGCGc- -3'
miRNA:   3'- -AGCGcGGGGG-GCCCGC-------------CG-GGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 38296 0.71 0.188155
Target:  5'- gUGCugGCCCgCCUgagcgcgcaGGGCGGCCCGAUGGu -3'
miRNA:   3'- aGCG--CGGG-GGG---------CCCGCCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 38928 0.7 0.201554
Target:  5'- gCGCGCCaagCC-GGCGGCCgGGCGGGc -3'
miRNA:   3'- aGCGCGGgg-GGcCCGCCGGgCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 39173 0.66 0.369351
Target:  5'- aCGCGCUCgggCCCGacucGCGcCCCGGCGAGc -3'
miRNA:   3'- aGCGCGGG---GGGCc---CGCcGGGCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.