miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 138014 0.76 0.085653
Target:  5'- -gGCgGCCCgcagCCCGGcGCGGCCCGGCGGc -3'
miRNA:   3'- agCG-CGGG----GGGCC-CGCCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 137915 0.67 0.35467
Target:  5'- gCGgGCCCCgCGaGCgGGCCCGGCu-- -3'
miRNA:   3'- aGCgCGGGGgGCcCG-CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 137779 0.69 0.254548
Target:  5'- -gGCGCgCCCCCGGGCcccgccgcccgcgccGGCgCCGccccuggugcucGCGGGg -3'
miRNA:   3'- agCGCG-GGGGGCCCG---------------CCG-GGC------------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 135641 0.66 0.361225
Target:  5'- aUGCGCUgCUaccugcgcgggcgCGGGCGGCCCucgcuCGAGg -3'
miRNA:   3'- aGCGCGGgGG-------------GCCCGCCGGGcu---GCUC- -5'
23650 5' -68.2 NC_005261.1 + 135436 0.66 0.376846
Target:  5'- cUCGCacGCCgCCCaGGCGGCgCGggcgcuGCGGGa -3'
miRNA:   3'- -AGCG--CGGgGGGcCCGCCGgGC------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 135312 0.67 0.319795
Target:  5'- gCGUGUCgCCCUGGGCGGCCguGCuGGa -3'
miRNA:   3'- aGCGCGG-GGGGCCCGCCGGgcUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 135069 0.7 0.220703
Target:  5'- cCGcCGCUUUCCGGcggcgggcucGCGGCCCGGCGGc -3'
miRNA:   3'- aGC-GCGGGGGGCC----------CGCCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 135001 0.7 0.19881
Target:  5'- -gGCGCCCCUggCGcGGCgGGCCCGcacgcggccgcggcgGCGAGg -3'
miRNA:   3'- agCGCGGGGG--GC-CCG-CCGGGC---------------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 134871 0.66 0.364903
Target:  5'- cCGCGCCCCCgCGGGCcccugcugugcguucGG-UgGugGAGc -3'
miRNA:   3'- aGCGCGGGGG-GCCCG---------------CCgGgCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 134715 0.67 0.340404
Target:  5'- gCGCGCCCagacccggCCGGGaccCGGaCUCGGCGAc -3'
miRNA:   3'- aGCGCGGGg-------GGCCC---GCC-GGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 134574 0.68 0.293793
Target:  5'- cCGCGgCUgCgcaGGGCgGGCCUGGCGAGc -3'
miRNA:   3'- aGCGCgGGgGg--CCCG-CCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 134356 0.68 0.275395
Target:  5'- cCGCGCCgCCgcgcgggGGGCGGCgCCGcuggcgacgGCGAGa -3'
miRNA:   3'- aGCGCGGgGGg------CCCGCCG-GGC---------UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 134134 0.67 0.319795
Target:  5'- cUCGa-CCCCCUGGGCuGcGCCUGGCGc- -3'
miRNA:   3'- -AGCgcGGGGGGCCCG-C-CGGGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 133794 0.7 0.206202
Target:  5'- gCGCauCCCgCCCGGGCuGCUCGACGGc -3'
miRNA:   3'- aGCGc-GGG-GGGCCCGcCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 133019 0.66 0.392141
Target:  5'- cUGCGCCaCCCgCGGGCGcGCCaCcGCGc- -3'
miRNA:   3'- aGCGCGG-GGG-GCCCGC-CGG-GcUGCuc -5'
23650 5' -68.2 NC_005261.1 + 132898 0.69 0.246797
Target:  5'- cCGgGCgCCgCGGGCGGCgCCGAgCGGc -3'
miRNA:   3'- aGCgCGgGGgGCCCGCCG-GGCU-GCUc -5'
23650 5' -68.2 NC_005261.1 + 132587 0.73 0.126182
Target:  5'- -gGCGCgCCCgCGGacgccCGGCCCGGCGAGc -3'
miRNA:   3'- agCGCGgGGG-GCCc----GCCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 132472 0.66 0.372337
Target:  5'- cCGCGCCggcagcgccucgccgUCCUGGGaCGcGCCCGACc-- -3'
miRNA:   3'- aGCGCGG---------------GGGGCCC-GC-CGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 132086 0.68 0.300136
Target:  5'- gUCGcCGCUgCCgcggaGGGCGGCCgCGACGc- -3'
miRNA:   3'- -AGC-GCGGgGGg----CCCGCCGG-GCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 131952 0.66 0.384443
Target:  5'- cCGCGCCCgucuaCCGGGUGGagcugCCGcGCGGc -3'
miRNA:   3'- aGCGCGGGg----GGCCCGCCg----GGC-UGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.