miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 131650 0.77 0.063736
Target:  5'- aCGgGCCCCCCGGGCG-CaCCGucuGCGAGg -3'
miRNA:   3'- aGCgCGGGGGGCCCGCcG-GGC---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 131454 0.71 0.188155
Target:  5'- cCGCGCCUCgCGGGCGccuCCCGccuccGCGAGc -3'
miRNA:   3'- aGCGCGGGGgGCCCGCc--GGGC-----UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 130951 0.69 0.254548
Target:  5'- gCGCGaCCCCCUucuGGUuccucuccaaguucgGGCCCGGCGAa -3'
miRNA:   3'- aGCGC-GGGGGGc--CCG---------------CCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 130857 0.69 0.236065
Target:  5'- gCGCGCCCggCCGGGCgccgcGGCCUGGCc-- -3'
miRNA:   3'- aGCGCGGGg-GGCCCG-----CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 130546 0.73 0.123197
Target:  5'- gUCGCGUuuuauCUgCUGGGCGGCCCGcCGGGc -3'
miRNA:   3'- -AGCGCG-----GGgGGCCCGCCGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 129768 0.67 0.333429
Target:  5'- -gGCGaCCgCCGGGCucGGCCCGGCc-- -3'
miRNA:   3'- agCGCgGGgGGCCCG--CCGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 128782 0.68 0.300136
Target:  5'- gCGCGCCguugUCUGGGCgcccgGGCCCGcgGCGGGg -3'
miRNA:   3'- aGCGCGGg---GGGCCCG-----CCGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 127893 0.68 0.306583
Target:  5'- -gGCGCCCgUCGGGCccgGGCCUGGgcuUGGGc -3'
miRNA:   3'- agCGCGGGgGGCCCG---CCGGGCU---GCUC- -5'
23650 5' -68.2 NC_005261.1 + 127499 0.66 0.399938
Target:  5'- -gGCuGCCUgCCGGGCguacucggcGGCCaCGAgCGAGa -3'
miRNA:   3'- agCG-CGGGgGGCCCG---------CCGG-GCU-GCUC- -5'
23650 5' -68.2 NC_005261.1 + 127002 0.66 0.384443
Target:  5'- -gGgGCCgaCCCCGccgcaggcGGCGGCCCGAgcaGGGa -3'
miRNA:   3'- agCgCGG--GGGGC--------CCGCCGGGCUg--CUC- -5'
23650 5' -68.2 NC_005261.1 + 125676 0.73 0.123197
Target:  5'- aCGUGCCgCCgaauggguuugCCGGGCuuGGCCCGGCGAc -3'
miRNA:   3'- aGCGCGG-GG-----------GGCCCG--CCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 125532 0.71 0.179663
Target:  5'- cUCGCGCCgCCCgcaGGGCGGCgCCa--GAGg -3'
miRNA:   3'- -AGCGCGG-GGGg--CCCGCCG-GGcugCUC- -5'
23650 5' -68.2 NC_005261.1 + 125102 0.68 0.306583
Target:  5'- -gGCGCCCCCUuccgGGGCGcGCUCGGg--- -3'
miRNA:   3'- agCGCGGGGGG----CCCGC-CGGGCUgcuc -5'
23650 5' -68.2 NC_005261.1 + 121619 0.72 0.152568
Target:  5'- cCGcCGCCUCCCGccgcucGGCGGCcgccgCCGGCGAGc -3'
miRNA:   3'- aGC-GCGGGGGGC------CCGCCG-----GGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 121382 0.66 0.384443
Target:  5'- -gGCGCCCCgCGgcGGCGGCgCCugccCGAGu -3'
miRNA:   3'- agCGCGGGGgGC--CCGCCG-GGcu--GCUC- -5'
23650 5' -68.2 NC_005261.1 + 120960 0.69 0.246797
Target:  5'- cUCGCGCCCCgCgGGGCGcGUgCCGcCGcAGg -3'
miRNA:   3'- -AGCGCGGGG-GgCCCGC-CG-GGCuGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 119267 0.68 0.293793
Target:  5'- gCGCGCUCCugcucgCUGGGCgggGGCUCGcCGAGg -3'
miRNA:   3'- aGCGCGGGG------GGCCCG---CCGGGCuGCUC- -5'
23650 5' -68.2 NC_005261.1 + 118496 0.68 0.306583
Target:  5'- -gGCGCUgcggaCCCUGGcGCcGCUCGGCGAGg -3'
miRNA:   3'- agCGCGG-----GGGGCC-CGcCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 118131 0.68 0.300136
Target:  5'- cUCGCGCCgCUCGGcCGGCUCG-CGcAGa -3'
miRNA:   3'- -AGCGCGGgGGGCCcGCCGGGCuGC-UC- -5'
23650 5' -68.2 NC_005261.1 + 118084 0.67 0.347485
Target:  5'- cCGCGCUCgUCUGcuGGCGGCCCGccGCGcAGa -3'
miRNA:   3'- aGCGCGGG-GGGC--CCGCCGGGC--UGC-UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.