miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 117666 0.72 0.145536
Target:  5'- -aGCGCCCCgCCGcgcccGGCcgGGCCCGcgGCGAGg -3'
miRNA:   3'- agCGCGGGG-GGC-----CCG--CCGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 117503 0.73 0.132353
Target:  5'- cUUGCGCCCgCCGGcGCcGCCaCGAUGAGc -3'
miRNA:   3'- -AGCGCGGGgGGCC-CGcCGG-GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 117264 0.66 0.376846
Target:  5'- cCGCGCgCCUCGaggacGGCGaGCCUGGCGc- -3'
miRNA:   3'- aGCGCGgGGGGC-----CCGC-CGGGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 117214 0.67 0.319795
Target:  5'- gCGCGCCCgcugCCUGGGCGccgaGUCCGccuCGGGu -3'
miRNA:   3'- aGCGCGGG----GGGCCCGC----CGGGCu--GCUC- -5'
23650 5' -68.2 NC_005261.1 + 116061 0.67 0.35467
Target:  5'- -gGCGCCCCgCGuGGCGcgccggucCCCGugGAu -3'
miRNA:   3'- agCGCGGGGgGC-CCGCc-------GGGCugCUc -5'
23650 5' -68.2 NC_005261.1 + 115992 0.68 0.269471
Target:  5'- gUCGCugacgaGCCgCCCGaGGCGGCCUGAgccgcCGAc -3'
miRNA:   3'- -AGCG------CGGgGGGC-CCGCCGGGCU-----GCUc -5'
23650 5' -68.2 NC_005261.1 + 115856 0.73 0.129233
Target:  5'- gCGCGgCCCCCGccgaGGCGcGCCCGGCa-- -3'
miRNA:   3'- aGCGCgGGGGGC----CCGC-CGGGCUGcuc -5'
23650 5' -68.2 NC_005261.1 + 113299 0.66 0.392141
Target:  5'- cUCuCGCUgCCgCGGGCcugGGCCCGgcugcGCGAGa -3'
miRNA:   3'- -AGcGCGGgGG-GCCCG---CCGGGC-----UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 113128 0.67 0.313136
Target:  5'- cUCuCGCCCgCCgCGcGGCGGCUgaaCGugGAGa -3'
miRNA:   3'- -AGcGCGGG-GG-GC-CCGCCGG---GCugCUC- -5'
23650 5' -68.2 NC_005261.1 + 112056 0.66 0.369351
Target:  5'- -aGcCGgCCUUCGGGCGuGCCCucgucGGCGAGg -3'
miRNA:   3'- agC-GCgGGGGGCCCGC-CGGG-----CUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 111776 0.66 0.369351
Target:  5'- cUGCGCgCCCgGGGUGuGCCCcugGACGc- -3'
miRNA:   3'- aGCGCGgGGGgCCCGC-CGGG---CUGCuc -5'
23650 5' -68.2 NC_005261.1 + 110945 0.7 0.196998
Target:  5'- -aGCGCCgCCC-GGCGGCCCaccCGGGa -3'
miRNA:   3'- agCGCGGgGGGcCCGCCGGGcu-GCUC- -5'
23650 5' -68.2 NC_005261.1 + 110227 0.68 0.269471
Target:  5'- gCGaCGCCUCCagcguGGGCGGCgCGGCGc- -3'
miRNA:   3'- aGC-GCGGGGGg----CCCGCCGgGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 110173 0.85 0.01814
Target:  5'- cCGCGCCCCCCGGGCGGCaguuccgCGACGu- -3'
miRNA:   3'- aGCGCGGGGGGCCCGCCGg------GCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 109506 0.68 0.287556
Target:  5'- cCGCGCCCgCCgCGGgguuuauuGCGcGCCCGccGCGGGc -3'
miRNA:   3'- aGCGCGGG-GG-GCC--------CGC-CGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 108599 0.67 0.35467
Target:  5'- cUCGCccacgggcaccaGCgCCUCGGGCGGCaCCGAguCGGc -3'
miRNA:   3'- -AGCG------------CGgGGGGCCCGCCG-GGCU--GCUc -5'
23650 5' -68.2 NC_005261.1 + 107883 0.66 0.376092
Target:  5'- cUCGCGCCCgcggcccgcuuguCCgCGGccGCGGCCuCGgccACGAGu -3'
miRNA:   3'- -AGCGCGGG-------------GG-GCC--CGCCGG-GC---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 107669 0.77 0.072119
Target:  5'- cCGCgGCCCCgCCGGGCGuugccGCCgCGGCGGGg -3'
miRNA:   3'- aGCG-CGGGG-GGCCCGC-----CGG-GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 106735 0.66 0.384443
Target:  5'- cUCGUGCagCCCCGGcGCcuccgcGCCCGccACGAGc -3'
miRNA:   3'- -AGCGCGg-GGGGCC-CGc-----CGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 106654 0.67 0.324519
Target:  5'- gUCGCGCUCgCCGGcGCGgucguccagcgcgcGCCCGAgGGc -3'
miRNA:   3'- -AGCGCGGGgGGCC-CGC--------------CGGGCUgCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.