miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23650 5' -68.2 NC_005261.1 + 127499 0.66 0.399938
Target:  5'- -gGCuGCCUgCCGGGCguacucggcGGCCaCGAgCGAGa -3'
miRNA:   3'- agCG-CGGGgGGCCCG---------CCGG-GCU-GCUC- -5'
23650 5' -68.2 NC_005261.1 + 63015 0.75 0.092166
Target:  5'- cCGCGCCCgCgCGGGCGccggcGCCCGcgGCGAGg -3'
miRNA:   3'- aGCGCGGGgG-GCCCGC-----CGGGC--UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 95378 0.74 0.106627
Target:  5'- cUCGCgGCCCCCCGGcgcgccgcucGCGGCCaucaCGGCGGa -3'
miRNA:   3'- -AGCG-CGGGGGGCC----------CGCCGG----GCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 96200 0.74 0.106627
Target:  5'- aCGCGCa--CUGGGCGcGCCCGACGAu -3'
miRNA:   3'- aGCGCGgggGGCCCGC-CGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 15297 0.74 0.109235
Target:  5'- gUCGCGgCCUCCGGGUcgucggagccgGGCCCGuCGAa -3'
miRNA:   3'- -AGCGCgGGGGGCCCG-----------CCGGGCuGCUc -5'
23650 5' -68.2 NC_005261.1 + 73469 0.74 0.111904
Target:  5'- gCGCGCCCCCCcuGGGCcgcGGCgCGGCGc- -3'
miRNA:   3'- aGCGCGGGGGG--CCCG---CCGgGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 83067 0.74 0.114633
Target:  5'- cUGCGCgCCCCCGcGGCGGC-CGGCGc- -3'
miRNA:   3'- aGCGCG-GGGGGC-CCGCCGgGCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 94048 0.74 0.120278
Target:  5'- gCGCGCCCCCCcaGCGGCgCCGG-GAGc -3'
miRNA:   3'- aGCGCGGGGGGccCGCCG-GGCUgCUC- -5'
23650 5' -68.2 NC_005261.1 + 43820 0.73 0.123197
Target:  5'- gCGCGCCCUCCGuGGagaagcuGCUCGGCGAGg -3'
miRNA:   3'- aGCGCGGGGGGC-CCgc-----CGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 76858 0.75 0.089945
Target:  5'- cUCGCGCCgCCU-GGC-GCCCGGCGAGg -3'
miRNA:   3'- -AGCGCGGgGGGcCCGcCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 138014 0.76 0.085653
Target:  5'- -gGCgGCCCgcagCCCGGcGCGGCCCGGCGGc -3'
miRNA:   3'- agCG-CGGG----GGGCC-CGCCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 343 0.76 0.085653
Target:  5'- -gGCgGCCCgcagCCCGGcGCGGCCCGGCGGc -3'
miRNA:   3'- agCG-CGGG----GGGCC-CGCCGGGCUGCUc -5'
23650 5' -68.2 NC_005261.1 + 12735 0.89 0.008675
Target:  5'- cCGCcgGCCCCCUGGGCgGGCCCGGCGAGg -3'
miRNA:   3'- aGCG--CGGGGGGCCCG-CCGGGCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 110173 0.85 0.01814
Target:  5'- cCGCGCCCCCCGGGCGGCaguuccgCGACGu- -3'
miRNA:   3'- aGCGCGGGGGGCCCGCCGg------GCUGCuc -5'
23650 5' -68.2 NC_005261.1 + 72717 0.79 0.047282
Target:  5'- gUCGCGCCCgCCgccccguccgcgCGGGCGGCCCGcaugGCGGGc -3'
miRNA:   3'- -AGCGCGGG-GG------------GCCCGCCGGGC----UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 131650 0.77 0.063736
Target:  5'- aCGgGCCCCCCGGGCG-CaCCGucuGCGAGg -3'
miRNA:   3'- aGCgCGGGGGGCCCGCcG-GGC---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 107669 0.77 0.072119
Target:  5'- cCGCgGCCCCgCCGGGCGuugccGCCgCGGCGGGg -3'
miRNA:   3'- aGCG-CGGGG-GGCCCGC-----CGG-GCUGCUC- -5'
23650 5' -68.2 NC_005261.1 + 11900 0.76 0.073919
Target:  5'- gCGCGCCCgCCgCGGGCccGGCCCGGCcGGc -3'
miRNA:   3'- aGCGCGGG-GG-GCCCG--CCGGGCUGcUC- -5'
23650 5' -68.2 NC_005261.1 + 13059 0.76 0.077648
Target:  5'- gCGCGCCCCugCCGGGCgcguccgccGGCCCGucgGCGGGc -3'
miRNA:   3'- aGCGCGGGG--GGCCCG---------CCGGGC---UGCUC- -5'
23650 5' -68.2 NC_005261.1 + 4517 0.76 0.079579
Target:  5'- gCGCGCCCgCgCGGGC-GCCgCGGCGAGg -3'
miRNA:   3'- aGCGCGGGgG-GCCCGcCGG-GCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.