Results 41 - 60 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23650 | 5' | -68.2 | NC_005261.1 | + | 107669 | 0.77 | 0.072119 |
Target: 5'- cCGCgGCCCCgCCGGGCGuugccGCCgCGGCGGGg -3' miRNA: 3'- aGCG-CGGGG-GGCCCGC-----CGG-GCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 131650 | 0.77 | 0.063736 |
Target: 5'- aCGgGCCCCCCGGGCG-CaCCGucuGCGAGg -3' miRNA: 3'- aGCgCGGGGGGCCCGCcG-GGC---UGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 72717 | 0.79 | 0.047282 |
Target: 5'- gUCGCGCCCgCCgccccguccgcgCGGGCGGCCCGcaugGCGGGc -3' miRNA: 3'- -AGCGCGGG-GG------------GCCCGCCGGGC----UGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 110173 | 0.85 | 0.01814 |
Target: 5'- cCGCGCCCCCCGGGCGGCaguuccgCGACGu- -3' miRNA: 3'- aGCGCGGGGGGCCCGCCGg------GCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 12735 | 0.89 | 0.008675 |
Target: 5'- cCGCcgGCCCCCUGGGCgGGCCCGGCGAGg -3' miRNA: 3'- aGCG--CGGGGGGCCCG-CCGGGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 96200 | 0.74 | 0.106627 |
Target: 5'- aCGCGCa--CUGGGCGcGCCCGACGAu -3' miRNA: 3'- aGCGCGgggGGCCCGC-CGGGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 15297 | 0.74 | 0.109235 |
Target: 5'- gUCGCGgCCUCCGGGUcgucggagccgGGCCCGuCGAa -3' miRNA: 3'- -AGCGCgGGGGGCCCG-----------CCGGGCuGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 23874 | 0.73 | 0.129233 |
Target: 5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3' miRNA: 3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 23817 | 0.73 | 0.129233 |
Target: 5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3' miRNA: 3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 23760 | 0.73 | 0.129233 |
Target: 5'- gCGgGCUugCCCCGGGCGGgCCGGCuAGg -3' miRNA: 3'- aGCgCGG--GGGGCCCGCCgGGCUGcUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 132587 | 0.73 | 0.126182 |
Target: 5'- -gGCGCgCCCgCGGacgccCGGCCCGGCGAGc -3' miRNA: 3'- agCGCGgGGG-GCCc----GCCGGGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 46492 | 0.73 | 0.126182 |
Target: 5'- -gGCGCCCUCCgcgGGGCGcaGCCCGGCGu- -3' miRNA: 3'- agCGCGGGGGG---CCCGC--CGGGCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 88154 | 0.73 | 0.124383 |
Target: 5'- -gGCGCCCCggccgcgcagCCGGGCcggggcgacgccggcGGCgCCGGCGAGg -3' miRNA: 3'- agCGCGGGG----------GGCCCG---------------CCG-GGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 125676 | 0.73 | 0.123197 |
Target: 5'- aCGUGCCgCCgaauggguuugCCGGGCuuGGCCCGGCGAc -3' miRNA: 3'- aGCGCGG-GG-----------GGCCCG--CCGGGCUGCUc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 90067 | 0.73 | 0.123197 |
Target: 5'- -gGCGCCCCgCGGGCgccgagGGCagCGACGGGg -3' miRNA: 3'- agCGCGGGGgGCCCG------CCGg-GCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 130546 | 0.73 | 0.123197 |
Target: 5'- gUCGCGUuuuauCUgCUGGGCGGCCCGcCGGGc -3' miRNA: 3'- -AGCGCG-----GGgGGCCCGCCGGGCuGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 43820 | 0.73 | 0.123197 |
Target: 5'- gCGCGCCCUCCGuGGagaagcuGCUCGGCGAGg -3' miRNA: 3'- aGCGCGGGGGGC-CCgc-----CGGGCUGCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 94048 | 0.74 | 0.120278 |
Target: 5'- gCGCGCCCCCCcaGCGGCgCCGG-GAGc -3' miRNA: 3'- aGCGCGGGGGGccCGCCG-GGCUgCUC- -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 83067 | 0.74 | 0.114633 |
Target: 5'- cUGCGCgCCCCCGcGGCGGC-CGGCGc- -3' miRNA: 3'- aGCGCG-GGGGGC-CCGCCGgGCUGCuc -5' |
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23650 | 5' | -68.2 | NC_005261.1 | + | 73469 | 0.74 | 0.111904 |
Target: 5'- gCGCGCCCCCCcuGGGCcgcGGCgCGGCGc- -3' miRNA: 3'- aGCGCGGGGGG--CCCG---CCGgGCUGCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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