miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23651 3' -57.3 NC_005261.1 + 44961 0.69 0.664413
Target:  5'- cUGCUgCGGGAcgcgcGCGAGGgcccGGGCGgGCc -3'
miRNA:   3'- cACGA-GCCCU-----UGCUCCa---CCCGCaUGu -5'
23651 3' -57.3 NC_005261.1 + 26829 0.69 0.664413
Target:  5'- cUGCUCuGGGAGgGGggcGGUGGGCGg--- -3'
miRNA:   3'- cACGAG-CCCUUgCU---CCACCCGCaugu -5'
23651 3' -57.3 NC_005261.1 + 13717 0.69 0.654221
Target:  5'- -gGCg-GGGGugGGGGUGGGgGUGg- -3'
miRNA:   3'- caCGagCCCUugCUCCACCCgCAUgu -5'
23651 3' -57.3 NC_005261.1 + 44884 0.69 0.654221
Target:  5'- -aGCgccgCGGGGAUGGccgGGGCGUACAc -3'
miRNA:   3'- caCGa---GCCCUUGCUccaCCCGCAUGU- -5'
23651 3' -57.3 NC_005261.1 + 9607 0.7 0.633792
Target:  5'- -cGcCUCGGGccCGGGGUGGGCagGCGg -3'
miRNA:   3'- caC-GAGCCCuuGCUCCACCCGcaUGU- -5'
23651 3' -57.3 NC_005261.1 + 110788 0.7 0.623571
Target:  5'- cGUGCUcCGGGGgacggcggGCGAGGaggcggGGGCGgACGg -3'
miRNA:   3'- -CACGA-GCCCU--------UGCUCCa-----CCCGCaUGU- -5'
23651 3' -57.3 NC_005261.1 + 56058 0.7 0.613357
Target:  5'- aUGUUCGGGGGCGcccUGGGCGaGCAg -3'
miRNA:   3'- cACGAGCCCUUGCuccACCCGCaUGU- -5'
23651 3' -57.3 NC_005261.1 + 92716 0.7 0.613357
Target:  5'- -aGCgggagCGGGAGCGGGaGcgGGGCGgggACAg -3'
miRNA:   3'- caCGa----GCCCUUGCUC-Ca-CCCGCa--UGU- -5'
23651 3' -57.3 NC_005261.1 + 115054 0.7 0.613357
Target:  5'- -gGCgaagGGGGGCGGGGUGGGgaUGUGCu -3'
miRNA:   3'- caCGag--CCCUUGCUCCACCC--GCAUGu -5'
23651 3' -57.3 NC_005261.1 + 118666 0.71 0.582828
Target:  5'- -cGCUCGGGGcUGAGGgcggcGGGCGcugGCGc -3'
miRNA:   3'- caCGAGCCCUuGCUCCa----CCCGCa--UGU- -5'
23651 3' -57.3 NC_005261.1 + 70578 0.71 0.582828
Target:  5'- -aGCUCGGGcGCGAGcgcaGcGGCGUGCGc -3'
miRNA:   3'- caCGAGCCCuUGCUCca--C-CCGCAUGU- -5'
23651 3' -57.3 NC_005261.1 + 137757 0.72 0.484271
Target:  5'- -cGCgcgCGGGGGCGGGGUgcgGGGCGcGCc -3'
miRNA:   3'- caCGa--GCCCUUGCUCCA---CCCGCaUGu -5'
23651 3' -57.3 NC_005261.1 + 74 0.72 0.484271
Target:  5'- -cGCgcgCGGGGGCGGGGUgcgGGGCGcGCc -3'
miRNA:   3'- caCGa--GCCCUUGCUCCA---CCCGCaUGu -5'
23651 3' -57.3 NC_005261.1 + 92788 0.72 0.484271
Target:  5'- -gGCUCGGGGuCGGGGUccggucgccGGGCGcGCGg -3'
miRNA:   3'- caCGAGCCCUuGCUCCA---------CCCGCaUGU- -5'
23651 3' -57.3 NC_005261.1 + 98344 0.72 0.474828
Target:  5'- cGUGUcgacgCGGGGGCgGGGGUGGGCGcggGCu -3'
miRNA:   3'- -CACGa----GCCCUUG-CUCCACCCGCa--UGu -5'
23651 3' -57.3 NC_005261.1 + 98821 0.75 0.330739
Target:  5'- cGUGC-CGGaaGACGgggGGGUGGGCGUACAg -3'
miRNA:   3'- -CACGaGCCc-UUGC---UCCACCCGCAUGU- -5'
23651 3' -57.3 NC_005261.1 + 46839 1.09 0.002045
Target:  5'- cGUGCUCGGGAACGAGGUGGGCGUACAg -3'
miRNA:   3'- -CACGAGCCCUUGCUCCACCCGCAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.