miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23651 5' -57.8 NC_005261.1 + 128791 0.66 0.795607
Target:  5'- uGUCuGGGCgcccgGGCCcGCggCGGGGCUCGCg -3'
miRNA:   3'- -CAG-CUUGaa---CCGGuCG--GUCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 42636 0.66 0.795607
Target:  5'- --gGGACUcGGCC-GCCGcGGCCgCGCg -3'
miRNA:   3'- cagCUUGAaCCGGuCGGUcUCGG-GCG- -5'
23651 5' -57.8 NC_005261.1 + 84877 0.66 0.795607
Target:  5'- -cCGAGCgcacgaggUGGCUGGCggcgaaGGuGCCCGCc -3'
miRNA:   3'- caGCUUGa-------ACCGGUCGg-----UCuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 104372 0.66 0.795607
Target:  5'- --aGAACagccGCCGGCCGGAGgCCGa -3'
miRNA:   3'- cagCUUGaac-CGGUCGGUCUCgGGCg -5'
23651 5' -57.8 NC_005261.1 + 105545 0.66 0.786499
Target:  5'- cUCGGGC-UGGCCGcacgcGCgCAGGGCCagguaCGCg -3'
miRNA:   3'- cAGCUUGaACCGGU-----CG-GUCUCGG-----GCG- -5'
23651 5' -57.8 NC_005261.1 + 5171 0.66 0.786499
Target:  5'- cGUCGAGCagGGCCGGguccuccuCCGG-GCCCc- -3'
miRNA:   3'- -CAGCUUGaaCCGGUC--------GGUCuCGGGcg -5'
23651 5' -57.8 NC_005261.1 + 81453 0.66 0.786499
Target:  5'- -gCGGGCgccGCCAGCagCAGGGCCCa- -3'
miRNA:   3'- caGCUUGaacCGGUCG--GUCUCGGGcg -5'
23651 5' -57.8 NC_005261.1 + 98584 0.66 0.786499
Target:  5'- -gCGGGCUcgGGCgAGUaggCGGcGCCCGCa -3'
miRNA:   3'- caGCUUGAa-CCGgUCG---GUCuCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 44206 0.66 0.786499
Target:  5'- -gCGAGCUgcaGG-CGGCCcgGGAGCgCGCg -3'
miRNA:   3'- caGCUUGAa--CCgGUCGG--UCUCGgGCG- -5'
23651 5' -57.8 NC_005261.1 + 59313 0.66 0.786499
Target:  5'- cGUCaaaccACUcGGCCAGCguGcgcGCCCGCc -3'
miRNA:   3'- -CAGcu---UGAaCCGGUCGguCu--CGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 62806 0.66 0.78558
Target:  5'- uUCGGGCUgGGCCAuaucgccGCgCGGGGCaCCGg -3'
miRNA:   3'- cAGCUUGAaCCGGU-------CG-GUCUCG-GGCg -5'
23651 5' -57.8 NC_005261.1 + 33699 0.66 0.780967
Target:  5'- gGUCGcGCggGGCCcGCUgcacgaggggcggugGGGGCCUGCc -3'
miRNA:   3'- -CAGCuUGaaCCGGuCGG---------------UCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 88475 0.66 0.777251
Target:  5'- -gCGGGCcguGCCGcGCCGGAGCgCGCc -3'
miRNA:   3'- caGCUUGaacCGGU-CGGUCUCGgGCG- -5'
23651 5' -57.8 NC_005261.1 + 19669 0.66 0.777251
Target:  5'- cUUGAccACgUUGGCgUGGuCCAGGGUCCGCa -3'
miRNA:   3'- cAGCU--UG-AACCG-GUC-GGUCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 38963 0.66 0.777251
Target:  5'- -gCGGGCU--GCgCAGCaacaAGAGCCUGCa -3'
miRNA:   3'- caGCUUGAacCG-GUCGg---UCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 101705 0.66 0.777251
Target:  5'- gGUCGAagcGCUccagcUGcGCCAGCgcgcccgcgauCAGGGCCuCGCu -3'
miRNA:   3'- -CAGCU---UGA-----AC-CGGUCG-----------GUCUCGG-GCG- -5'
23651 5' -57.8 NC_005261.1 + 64317 0.66 0.77632
Target:  5'- cGUCGc----GGCCGuagccgugcccgcGUCAGGGCCCGCc -3'
miRNA:   3'- -CAGCuugaaCCGGU-------------CGGUCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 41038 0.66 0.773516
Target:  5'- cGUCGuuguccccgGcGCCGGCCucAGAGCCgGCg -3'
miRNA:   3'- -CAGCuugaa----C-CGGUCGG--UCUCGGgCG- -5'
23651 5' -57.8 NC_005261.1 + 29251 0.67 0.767874
Target:  5'- -cCGcGCgacgGGCCGccGCCgcuggAGGGCCCGCu -3'
miRNA:   3'- caGCuUGaa--CCGGU--CGG-----UCUCGGGCG- -5'
23651 5' -57.8 NC_005261.1 + 3378 0.67 0.767874
Target:  5'- -gCGAGCgcGGCC-GCCAGccgcGCCgGCa -3'
miRNA:   3'- caGCUUGaaCCGGuCGGUCu---CGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.