miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23652 5' -61.9 NC_005261.1 + 97525 0.66 0.688253
Target:  5'- uCGGCUCGCCGcgaUCGgcggccccggcggugCCg-GCCCgucCGCc -3'
miRNA:   3'- -GCCGAGCGGC---AGCa--------------GGagCGGGa--GCG- -5'
23652 5' -61.9 NC_005261.1 + 13314 0.66 0.687289
Target:  5'- gGGcCUCGUaCGcagCGcCCUCGCaCUCGCg -3'
miRNA:   3'- gCC-GAGCG-GCa--GCaGGAGCGgGAGCG- -5'
23652 5' -61.9 NC_005261.1 + 133151 0.66 0.687289
Target:  5'- gCGcGCUCGCCGcCGUCggCGUCgC-CGCc -3'
miRNA:   3'- -GC-CGAGCGGCaGCAGgaGCGG-GaGCG- -5'
23652 5' -61.9 NC_005261.1 + 130593 0.66 0.687289
Target:  5'- gCGGCcccgCGCCuGgccCGUCUUUGCCUgCGCc -3'
miRNA:   3'- -GCCGa---GCGG-Ca--GCAGGAGCGGGaGCG- -5'
23652 5' -61.9 NC_005261.1 + 106136 0.66 0.687289
Target:  5'- cCGGCaaCGCCGgacauggugcCG-CCUCGCCgCUcCGCg -3'
miRNA:   3'- -GCCGa-GCGGCa---------GCaGGAGCGG-GA-GCG- -5'
23652 5' -61.9 NC_005261.1 + 74245 0.66 0.687289
Target:  5'- gGGCgCGCCGaguaCGUCCcauUCGCgCgcgCGCg -3'
miRNA:   3'- gCCGaGCGGCa---GCAGG---AGCGgGa--GCG- -5'
23652 5' -61.9 NC_005261.1 + 93959 0.66 0.687289
Target:  5'- gGGCggUCgGCCGUCGacgCCaacagCGCCCgcgUCGCc -3'
miRNA:   3'- gCCG--AG-CGGCAGCa--GGa----GCGGG---AGCG- -5'
23652 5' -61.9 NC_005261.1 + 83939 0.66 0.687289
Target:  5'- gCGGC-CGCCaUCGcugUCCcCGCCCcaccCGCg -3'
miRNA:   3'- -GCCGaGCGGcAGC---AGGaGCGGGa---GCG- -5'
23652 5' -61.9 NC_005261.1 + 35466 0.66 0.683427
Target:  5'- gCGGCgcgCGCgCGUCccgggGUCCcugccgcggcaccCGCCCUUGCc -3'
miRNA:   3'- -GCCGa--GCG-GCAG-----CAGGa------------GCGGGAGCG- -5'
23652 5' -61.9 NC_005261.1 + 27516 0.66 0.677624
Target:  5'- gGGCggGCCaGcUGggCC-CGCCCUCGCa -3'
miRNA:   3'- gCCGagCGG-CaGCa-GGaGCGGGAGCG- -5'
23652 5' -61.9 NC_005261.1 + 39483 0.66 0.677624
Target:  5'- gGGCcCGCCG-CGgacgaugaUCGcCCCUCGCc -3'
miRNA:   3'- gCCGaGCGGCaGCagg-----AGC-GGGAGCG- -5'
23652 5' -61.9 NC_005261.1 + 102486 0.66 0.677624
Target:  5'- uCGGCgCGCCGcCGcgccagcgCCUgGgCCUUGCg -3'
miRNA:   3'- -GCCGaGCGGCaGCa-------GGAgCgGGAGCG- -5'
23652 5' -61.9 NC_005261.1 + 43686 0.66 0.677624
Target:  5'- gCGGCUccaCGgCGagGUCCUgGCCUgccaCGCg -3'
miRNA:   3'- -GCCGA---GCgGCagCAGGAgCGGGa---GCG- -5'
23652 5' -61.9 NC_005261.1 + 2750 0.66 0.677624
Target:  5'- gCGGCggGCCGUCGcggcgggCCUCGaggCC-CGCc -3'
miRNA:   3'- -GCCGagCGGCAGCa------GGAGCg--GGaGCG- -5'
23652 5' -61.9 NC_005261.1 + 29831 0.66 0.677624
Target:  5'- cCGcGCUCGCCGagcugcgcgcCGUgCUCGCCggccgCGCg -3'
miRNA:   3'- -GC-CGAGCGGCa---------GCAgGAGCGGga---GCG- -5'
23652 5' -61.9 NC_005261.1 + 84957 0.66 0.675687
Target:  5'- gCGGC-CGCCGaggcgucgggcgCGUCCgcgaugCGCCggCGCa -3'
miRNA:   3'- -GCCGaGCGGCa-----------GCAGGa-----GCGGgaGCG- -5'
23652 5' -61.9 NC_005261.1 + 75085 0.66 0.667925
Target:  5'- gGGCUCGgCGggcaUCGUCUUCGggaCCUgGUa -3'
miRNA:   3'- gCCGAGCgGC----AGCAGGAGCg--GGAgCG- -5'
23652 5' -61.9 NC_005261.1 + 129326 0.66 0.667925
Target:  5'- uGGCgccgCGUCGcCGaCCUCGCCgCgguagCGCc -3'
miRNA:   3'- gCCGa---GCGGCaGCaGGAGCGG-Ga----GCG- -5'
23652 5' -61.9 NC_005261.1 + 97797 0.66 0.667925
Target:  5'- gGGC-CGgCGacCGUCCgccggCGCCCcCGCa -3'
miRNA:   3'- gCCGaGCgGCa-GCAGGa----GCGGGaGCG- -5'
23652 5' -61.9 NC_005261.1 + 123510 0.66 0.66501
Target:  5'- gCGGCagUGCCG-CGUCCgcuagcaagcUguaccgcgcgagcgUGCCCUCGCg -3'
miRNA:   3'- -GCCGa-GCGGCaGCAGG----------A--------------GCGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.