miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 3' -59.2 NC_005261.1 + 64513 0.66 0.744277
Target:  5'- -gGGCCcGCggGCGGCUCCUcgUCGGgGGg -3'
miRNA:   3'- uaCCGGcCGa-UGUCGGGGA--AGCUgUC- -5'
23653 3' -59.2 NC_005261.1 + 77037 0.66 0.744277
Target:  5'- -aGGCCGcGCgcGCGGCCC--UCGGCGa -3'
miRNA:   3'- uaCCGGC-CGa-UGUCGGGgaAGCUGUc -5'
23653 3' -59.2 NC_005261.1 + 75848 0.66 0.744277
Target:  5'- -gGGCgcgCGGCgccgacgGCGGCCCCgaCGGCGc -3'
miRNA:   3'- uaCCG---GCCGa------UGUCGGGGaaGCUGUc -5'
23653 3' -59.2 NC_005261.1 + 36809 0.66 0.744277
Target:  5'- -cGGCCGGCgcUACGuGCCCCgguauGCGGu -3'
miRNA:   3'- uaCCGGCCG--AUGU-CGGGGaagc-UGUC- -5'
23653 3' -59.2 NC_005261.1 + 63944 0.66 0.744277
Target:  5'- -aGcCCGGgUGCAGCCCCgugCG-CAGc -3'
miRNA:   3'- uaCcGGCCgAUGUCGGGGaa-GCuGUC- -5'
23653 3' -59.2 NC_005261.1 + 127681 0.66 0.744277
Target:  5'- -cGGCggCGGCcGCuGCCCCggCGGCGc -3'
miRNA:   3'- uaCCG--GCCGaUGuCGGGGaaGCUGUc -5'
23653 3' -59.2 NC_005261.1 + 71617 0.66 0.744277
Target:  5'- -cGGCCcgGGC-GCGGgCCCgggCGGCGGg -3'
miRNA:   3'- uaCCGG--CCGaUGUCgGGGaa-GCUGUC- -5'
23653 3' -59.2 NC_005261.1 + 117711 0.66 0.73454
Target:  5'- -aGGCCGGCgcGCGGgCCCgcaagCGGCc- -3'
miRNA:   3'- uaCCGGCCGa-UGUCgGGGaa---GCUGuc -5'
23653 3' -59.2 NC_005261.1 + 68153 0.66 0.73454
Target:  5'- cGUGGCCGGCUACacgcgcgcggAGCUCgCgcgCGccGCGGg -3'
miRNA:   3'- -UACCGGCCGAUG----------UCGGG-Gaa-GC--UGUC- -5'
23653 3' -59.2 NC_005261.1 + 1290 0.66 0.73454
Target:  5'- -aGGCCGGCgg-GGCuCCCgucgcCGGCGGc -3'
miRNA:   3'- uaCCGGCCGaugUCG-GGGaa---GCUGUC- -5'
23653 3' -59.2 NC_005261.1 + 134991 0.66 0.724715
Target:  5'- -gGGCCGcCgggGC-GCCCCUggcgCGGCGGg -3'
miRNA:   3'- uaCCGGCcGa--UGuCGGGGAa---GCUGUC- -5'
23653 3' -59.2 NC_005261.1 + 72752 0.66 0.724715
Target:  5'- cAUGGCgGGCcGCAuGCCCagcaCGGCGGc -3'
miRNA:   3'- -UACCGgCCGaUGU-CGGGgaa-GCUGUC- -5'
23653 3' -59.2 NC_005261.1 + 51317 0.66 0.714811
Target:  5'- --cGCCGGCgccGCcGCCgCCUUCGuCGGg -3'
miRNA:   3'- uacCGGCCGa--UGuCGG-GGAAGCuGUC- -5'
23653 3' -59.2 NC_005261.1 + 52367 0.66 0.714811
Target:  5'- -cGGagcccgCGGCgGCGGCCCCggUCGuCAGg -3'
miRNA:   3'- uaCCg-----GCCGaUGUCGGGGa-AGCuGUC- -5'
23653 3' -59.2 NC_005261.1 + 125703 0.66 0.714811
Target:  5'- uUGGcCCGGCgACGGCCgCCgcgggcUCGGCuGg -3'
miRNA:   3'- uACC-GGCCGaUGUCGG-GGa-----AGCUGuC- -5'
23653 3' -59.2 NC_005261.1 + 66657 0.66 0.704836
Target:  5'- -cGGCCGcCUccuccgcgaGCAGCCCCagcgccUCGGCGGc -3'
miRNA:   3'- uaCCGGCcGA---------UGUCGGGGa-----AGCUGUC- -5'
23653 3' -59.2 NC_005261.1 + 53588 0.66 0.704836
Target:  5'- -gGGCCGGCgGC-GCCCCagcggacCGACGa -3'
miRNA:   3'- uaCCGGCCGaUGuCGGGGaa-----GCUGUc -5'
23653 3' -59.2 NC_005261.1 + 86487 0.66 0.704836
Target:  5'- -cGGCCGGgc-CGGCgCCUgucugCGGCAGg -3'
miRNA:   3'- uaCCGGCCgauGUCGgGGAa----GCUGUC- -5'
23653 3' -59.2 NC_005261.1 + 55058 0.66 0.704836
Target:  5'- -gGGCCGGCgagcuCGGCCgCCgaaGGCAu -3'
miRNA:   3'- uaCCGGCCGau---GUCGG-GGaagCUGUc -5'
23653 3' -59.2 NC_005261.1 + 62049 0.66 0.6948
Target:  5'- -cGGCCGGCUccaggcgcagcaGCuGCCCCgccUCGcGCGa -3'
miRNA:   3'- uaCCGGCCGA------------UGuCGGGGa--AGC-UGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.