miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 21749 0.66 0.803429
Target:  5'- gGCUGCUGCGCcuggaGCGCgc--GCCgGGc -3'
miRNA:   3'- aCGACGGCGUGa----UGCGacaaCGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 87941 0.66 0.803429
Target:  5'- cUGgaGCCGCGCgcCGCcacgGCCCGc -3'
miRNA:   3'- -ACgaCGGCGUGauGCGacaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 99863 0.66 0.803429
Target:  5'- gGCcGCCGCGCgcCGCcGccGCUCGGc -3'
miRNA:   3'- aCGaCGGCGUGauGCGaCaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 130033 0.67 0.766798
Target:  5'- aUGCUGgCGuCACUacACGCg---GCCUGGu -3'
miRNA:   3'- -ACGACgGC-GUGA--UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 106360 0.67 0.776156
Target:  5'- cGCcGCCGCGCUGacgccgccguCGCcGUUGCCg-- -3'
miRNA:   3'- aCGaCGGCGUGAU----------GCGaCAACGGgcc -5'
23653 5' -57.9 NC_005261.1 + 117732 0.67 0.776156
Target:  5'- aGCgGCCGCGCgcugGCGCcGccGCCCc- -3'
miRNA:   3'- aCGaCGGCGUGa---UGCGaCaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 104833 0.67 0.776156
Target:  5'- cGCgggGCCGCGCcACGCggaccGCgCGGg -3'
miRNA:   3'- aCGa--CGGCGUGaUGCGacaa-CGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 70321 0.67 0.72728
Target:  5'- cGCUGCCGCAgUAgGCgcacgcgucgagcggGCCgGGg -3'
miRNA:   3'- aCGACGGCGUgAUgCGacaa-----------CGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 29834 0.67 0.766798
Target:  5'- cGCUcGCCGaGCUGCGCgccgUGCUCGc -3'
miRNA:   3'- aCGA-CGGCgUGAUGCGaca-ACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 129055 0.67 0.766798
Target:  5'- cGCUGCCGCGCccUACGUguUUGgUCGa -3'
miRNA:   3'- aCGACGGCGUG--AUGCGacAACgGGCc -5'
23653 5' -57.9 NC_005261.1 + 28259 0.67 0.728262
Target:  5'- gGCUGCuCGgGgggGCGCUGUUGCCg-- -3'
miRNA:   3'- aCGACG-GCgUga-UGCGACAACGGgcc -5'
23653 5' -57.9 NC_005261.1 + 31347 0.67 0.728262
Target:  5'- cGCUGCgGCG--GCGCgug-GCCUGGa -3'
miRNA:   3'- aCGACGgCGUgaUGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 30344 0.67 0.747732
Target:  5'- gGCgGCCGCGCU-CGCg---GCCCu- -3'
miRNA:   3'- aCGaCGGCGUGAuGCGacaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 51751 0.67 0.747732
Target:  5'- gGCUGCCGCuggccgugaaGCUgGCGCUGgccggcgucGCCCu- -3'
miRNA:   3'- aCGACGGCG----------UGA-UGCGACaa-------CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 51879 0.67 0.75732
Target:  5'- aGC-GCCGCGCggcagcagcgGCGCgcuacaucGCCCGGg -3'
miRNA:   3'- aCGaCGGCGUGa---------UGCGacaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 13048 0.67 0.747732
Target:  5'- cGCgggGCCGCGC-GCGCcccUGCCgGGc -3'
miRNA:   3'- aCGa--CGGCGUGaUGCGacaACGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 4962 0.67 0.75732
Target:  5'- cGCccccgGCCGCG--GCGUccucUGggGCCCGGa -3'
miRNA:   3'- aCGa----CGGCGUgaUGCG----ACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 59041 0.67 0.766798
Target:  5'- gUGCcGCCGCGCgagcucaGCGCgcgcgGCCgCGGa -3'
miRNA:   3'- -ACGaCGGCGUGa------UGCGacaa-CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 5133 0.67 0.776156
Target:  5'- gGCccGCCgGCGCUcGCGCgccucgGCCCGGc -3'
miRNA:   3'- aCGa-CGG-CGUGA-UGCGacaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 118976 0.67 0.766798
Target:  5'- cUGCacGCCGCGCUGUGCUucUGCgUCGGg -3'
miRNA:   3'- -ACGa-CGGCGUGAUGCGAcaACG-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.