miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 31347 0.67 0.728262
Target:  5'- cGCUGCgGCG--GCGCgug-GCCUGGa -3'
miRNA:   3'- aCGACGgCGUgaUGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 28259 0.67 0.728262
Target:  5'- gGCUGCuCGgGgggGCGCUGUUGCCg-- -3'
miRNA:   3'- aCGACG-GCgUga-UGCGACAACGGgcc -5'
23653 5' -57.9 NC_005261.1 + 4962 0.67 0.75732
Target:  5'- cGCccccgGCCGCG--GCGUccucUGggGCCCGGa -3'
miRNA:   3'- aCGa----CGGCGUgaUGCG----ACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 59041 0.67 0.766798
Target:  5'- gUGCcGCCGCGCgagcucaGCGCgcgcgGCCgCGGa -3'
miRNA:   3'- -ACGaCGGCGUGa------UGCGacaa-CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 5133 0.67 0.776156
Target:  5'- gGCccGCCgGCGCUcGCGCgccucgGCCCGGc -3'
miRNA:   3'- aCGa-CGG-CGUGA-UGCGacaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 117732 0.67 0.776156
Target:  5'- aGCgGCCGCGCgcugGCGCcGccGCCCc- -3'
miRNA:   3'- aCGaCGGCGUGa---UGCGaCaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 66288 0.67 0.776156
Target:  5'- gGCUGUCGCAgUGCGUcag-GCgCGGc -3'
miRNA:   3'- aCGACGGCGUgAUGCGacaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 51254 0.67 0.776156
Target:  5'- gGCgGCCGUGCUGCuGCUGU--CCCa- -3'
miRNA:   3'- aCGaCGGCGUGAUG-CGACAacGGGcc -5'
23653 5' -57.9 NC_005261.1 + 81196 0.67 0.773362
Target:  5'- gGCacgGCCGCGCggGCGCgagccggaccaccgUGgcGCCCGa -3'
miRNA:   3'- aCGa--CGGCGUGa-UGCG--------------ACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 130033 0.67 0.766798
Target:  5'- aUGCUGgCGuCACUacACGCg---GCCUGGu -3'
miRNA:   3'- -ACGACgGC-GUGA--UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 29834 0.67 0.766798
Target:  5'- cGCUcGCCGaGCUGCGCgccgUGCUCGc -3'
miRNA:   3'- aCGA-CGGCgUGAUGCGaca-ACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 129055 0.67 0.766798
Target:  5'- cGCUGCCGCGCccUACGUguUUGgUCGa -3'
miRNA:   3'- aCGACGGCGUG--AUGCGacAACgGGCc -5'
23653 5' -57.9 NC_005261.1 + 118976 0.67 0.766798
Target:  5'- cUGCacGCCGCGCUGUGCUucUGCgUCGGg -3'
miRNA:   3'- -ACGa-CGGCGUGAUGCGAcaACG-GGCC- -5'
23653 5' -57.9 NC_005261.1 + 100723 0.67 0.776156
Target:  5'- cGCgGCCGCGCcGCGCgcgcGCgCGGc -3'
miRNA:   3'- aCGaCGGCGUGaUGCGacaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 88762 0.67 0.776156
Target:  5'- gGUgGCgGCGCUGCGCUccucgGCCCuGGc -3'
miRNA:   3'- aCGaCGgCGUGAUGCGAcaa--CGGG-CC- -5'
23653 5' -57.9 NC_005261.1 + 4151 0.67 0.776156
Target:  5'- cGCUGCagcagGCGCgccaGCUGcagGUCCGGg -3'
miRNA:   3'- aCGACGg----CGUGaug-CGACaa-CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 92598 0.67 0.766798
Target:  5'- cGCaGCCGCuCgcgGCGCg--UGCCgGGg -3'
miRNA:   3'- aCGaCGGCGuGa--UGCGacaACGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 74702 0.67 0.766798
Target:  5'- gGCcGCCGCGCggGCGCggaaccggGCCgCGGc -3'
miRNA:   3'- aCGaCGGCGUGa-UGCGacaa----CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 44717 0.67 0.766798
Target:  5'- gGCUGaCGCGCgcaggGCGCUGcaGCUgGGc -3'
miRNA:   3'- aCGACgGCGUGa----UGCGACaaCGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 71066 0.67 0.766798
Target:  5'- aGCcGCCGCGCggcggGCGg-GgcGUCCGGg -3'
miRNA:   3'- aCGaCGGCGUGa----UGCgaCaaCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.