Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23653 | 5' | -57.9 | NC_005261.1 | + | 5133 | 0.67 | 0.776156 |
Target: 5'- gGCccGCCgGCGCUcGCGCgccucgGCCCGGc -3' miRNA: 3'- aCGa-CGG-CGUGA-UGCGacaa--CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 37989 | 0.68 | 0.688406 |
Target: 5'- cGCgugGaCGCGCUACGC-GgcGCCCGa -3' miRNA: 3'- aCGa--CgGCGUGAUGCGaCaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 99667 | 0.68 | 0.688406 |
Target: 5'- cGCUGaCCGUcguCaGCGCgc-UGCCCGGg -3' miRNA: 3'- aCGAC-GGCGu--GaUGCGacaACGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 101103 | 0.68 | 0.718399 |
Target: 5'- cGCgGCCGCGC-GCGCcuUGgcGCCCu- -3' miRNA: 3'- aCGaCGGCGUGaUGCG--ACaaCGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 72427 | 0.68 | 0.718399 |
Target: 5'- cGCUcGCCGCGCUugcccccgGCGggGgcGCCCGcGg -3' miRNA: 3'- aCGA-CGGCGUGA--------UGCgaCaaCGGGC-C- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 123903 | 0.68 | 0.678303 |
Target: 5'- gGCcGCCGCugUGgGgUGcgGCCCGa -3' miRNA: 3'- aCGaCGGCGugAUgCgACaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 90732 | 0.68 | 0.678303 |
Target: 5'- cGCUggGCCGCGCcugagGCGCUG--GCgCGGg -3' miRNA: 3'- aCGA--CGGCGUGa----UGCGACaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 86087 | 0.68 | 0.678303 |
Target: 5'- aUGCU-CCGCGCguucuCGUcGgcGCCCGGg -3' miRNA: 3'- -ACGAcGGCGUGau---GCGaCaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 118374 | 0.68 | 0.678303 |
Target: 5'- cGCUGgggCGCGCggcccgagGCGCUGgcgGCCgCGGg -3' miRNA: 3'- aCGACg--GCGUGa-------UGCGACaa-CGG-GCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 69540 | 0.68 | 0.688406 |
Target: 5'- cGCUGgCGCGC-GCGCUGgggacggcgGCCCc- -3' miRNA: 3'- aCGACgGCGUGaUGCGACaa-------CGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 30197 | 0.68 | 0.698462 |
Target: 5'- gGCcGCCGCGCUggaggcggccGCGCUGgcgGCgCGa -3' miRNA: 3'- aCGaCGGCGUGA----------UGCGACaa-CGgGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 36803 | 0.68 | 0.674251 |
Target: 5'- uUGCgccgGCCgGCGCUACGUgccccgguaugcgGUgccggcGCCCGGg -3' miRNA: 3'- -ACGa---CGG-CGUGAUGCGa------------CAa-----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 57914 | 0.68 | 0.708463 |
Target: 5'- cGCggaagacgGcCCGCAC-GCGCgUGcUGCCCGGc -3' miRNA: 3'- aCGa-------C-GGCGUGaUGCG-ACaACGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 63010 | 0.68 | 0.708463 |
Target: 5'- gGCgGCCGCGCccgcgcggGCGCcGgcGCCCGcGg -3' miRNA: 3'- aCGaCGGCGUGa-------UGCGaCaaCGGGC-C- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 29690 | 0.68 | 0.698462 |
Target: 5'- cGCUGCCGCACgugGCGgcCUGcgUGgCCa- -3' miRNA: 3'- aCGACGGCGUGa--UGC--GACa-ACgGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 45414 | 0.69 | 0.627394 |
Target: 5'- cUGCUGCgGCGcCUGCGCccGccGCCCGc -3' miRNA: 3'- -ACGACGgCGU-GAUGCGa-CaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 13579 | 0.69 | 0.627394 |
Target: 5'- cUGCaGCCGCACcgagaGCGUgaaggaGUcGCCCGGg -3' miRNA: 3'- -ACGaCGGCGUGa----UGCGa-----CAaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 38165 | 0.69 | 0.627394 |
Target: 5'- cGCgGCCGCagcacgGCUGC-CUGgagGCCUGGg -3' miRNA: 3'- aCGaCGGCG------UGAUGcGACaa-CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 81372 | 0.69 | 0.627394 |
Target: 5'- gGC-GCCGgGCU-CGCUGgggGCgCCGGg -3' miRNA: 3'- aCGaCGGCgUGAuGCGACaa-CG-GGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 71609 | 0.69 | 0.627394 |
Target: 5'- cGCcGCCGCgGCccggGCGCgg--GCCCGGg -3' miRNA: 3'- aCGaCGGCG-UGa---UGCGacaaCGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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