Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23653 | 5' | -57.9 | NC_005261.1 | + | 118595 | 0.7 | 0.585666 |
Target: 5'- cGCcGCCGCggaGCUcGCGCUGUcggccguUGCCCuGGc -3' miRNA: 3'- aCGaCGGCG---UGA-UGCGACA-------ACGGG-CC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 75990 | 0.7 | 0.586679 |
Target: 5'- cGCgGCCGCcCUcGCGCUGgacGCCCuGGc -3' miRNA: 3'- aCGaCGGCGuGA-UGCGACaa-CGGG-CC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 10518 | 0.7 | 0.596826 |
Target: 5'- cGCUGCgggccccgcggCGCGCU-CGCUGUcGCCCc- -3' miRNA: 3'- aCGACG-----------GCGUGAuGCGACAaCGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 134567 | 0.7 | 0.596826 |
Target: 5'- gGCggcGCCGCgGCUGCGCagGgcggGCCUGGc -3' miRNA: 3'- aCGa--CGGCG-UGAUGCGa-Caa--CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 98739 | 0.7 | 0.566489 |
Target: 5'- cGCgGCCGCGCggGCGUUGgccGCgCGGu -3' miRNA: 3'- aCGaCGGCGUGa-UGCGACaa-CGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 44961 | 0.7 | 0.566489 |
Target: 5'- cUGCUGCgGgACgcGCGCgaggGCCCGGg -3' miRNA: 3'- -ACGACGgCgUGa-UGCGacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 126502 | 0.7 | 0.546482 |
Target: 5'- aGCUGCCGCAggcgguCUGC-CUGggcGCCCGc -3' miRNA: 3'- aCGACGGCGU------GAUGcGACaa-CGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 76082 | 0.7 | 0.546482 |
Target: 5'- gGCUGCUGCGCcucgugGCGCUGgaGCUgGa -3' miRNA: 3'- aCGACGGCGUGa-----UGCGACaaCGGgCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 97135 | 0.7 | 0.546482 |
Target: 5'- cGCgGCCaCGCUcggagGCGCUGgcgccgGCCCGGc -3' miRNA: 3'- aCGaCGGcGUGA-----UGCGACaa----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 97213 | 0.7 | 0.546482 |
Target: 5'- cGCgGCCaCGCUcggagGCGCUGgcgccgGCCCGGc -3' miRNA: 3'- aCGaCGGcGUGA-----UGCGACaa----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 133586 | 0.7 | 0.546482 |
Target: 5'- -cUUGCCGCGCUgGCGCUGcucacgGCCCa- -3' miRNA: 3'- acGACGGCGUGA-UGCGACaa----CGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 21198 | 0.7 | 0.556459 |
Target: 5'- cGCgGCCGCGg-ACGCUGgc-CCCGGc -3' miRNA: 3'- aCGaCGGCGUgaUGCGACaacGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 38165 | 0.69 | 0.627394 |
Target: 5'- cGCgGCCGCagcacgGCUGC-CUGgagGCCUGGg -3' miRNA: 3'- aCGaCGGCG------UGAUGcGACaa-CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 13579 | 0.69 | 0.627394 |
Target: 5'- cUGCaGCCGCACcgagaGCGUgaaggaGUcGCCCGGg -3' miRNA: 3'- -ACGaCGGCGUGa----UGCGa-----CAaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 29528 | 0.69 | 0.617191 |
Target: 5'- gGCUGCagaGCGCgaagcuCGCgg--GCCCGGa -3' miRNA: 3'- aCGACGg--CGUGau----GCGacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 58271 | 0.69 | 0.617191 |
Target: 5'- cGCUcGCCGCGCUcacggggccgGCGCgccggGggGCgCGGg -3' miRNA: 3'- aCGA-CGGCGUGA----------UGCGa----CaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 35570 | 0.69 | 0.617191 |
Target: 5'- aGCcGCCGCGCUAUcCUccaucGCCCGGa -3' miRNA: 3'- aCGaCGGCGUGAUGcGAcaa--CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 120400 | 0.69 | 0.606999 |
Target: 5'- aGCagaGCgGCGuCUGCGCUGagcgGCCUGGg -3' miRNA: 3'- aCGa--CGgCGU-GAUGCGACaa--CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 20711 | 0.69 | 0.606999 |
Target: 5'- cUGCUGaacuCGgGCcGCGCUGggGCUCGGc -3' miRNA: 3'- -ACGACg---GCgUGaUGCGACaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 45414 | 0.69 | 0.627394 |
Target: 5'- cUGCUGCgGCGcCUGCGCccGccGCCCGc -3' miRNA: 3'- -ACGACGgCGU-GAUGCGa-CaaCGGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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