miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 71609 0.69 0.627394
Target:  5'- cGCcGCCGCgGCccggGCGCgg--GCCCGGg -3'
miRNA:   3'- aCGaCGGCG-UGa---UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 45414 0.69 0.627394
Target:  5'- cUGCUGCgGCGcCUGCGCccGccGCCCGc -3'
miRNA:   3'- -ACGACGgCGU-GAUGCGa-CaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 127881 0.69 0.606999
Target:  5'- gGgaGUCGCGCcgGCGCccGUcggGCCCGGg -3'
miRNA:   3'- aCgaCGGCGUGa-UGCGa-CAa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 20711 0.69 0.606999
Target:  5'- cUGCUGaacuCGgGCcGCGCUGggGCUCGGc -3'
miRNA:   3'- -ACGACg---GCgUGaUGCGACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 120400 0.69 0.606999
Target:  5'- aGCagaGCgGCGuCUGCGCUGagcgGCCUGGg -3'
miRNA:   3'- aCGa--CGgCGU-GAUGCGACaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 35570 0.69 0.617191
Target:  5'- aGCcGCCGCGCUAUcCUccaucGCCCGGa -3'
miRNA:   3'- aCGaCGGCGUGAUGcGAcaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 58271 0.69 0.617191
Target:  5'- cGCUcGCCGCGCUcacggggccgGCGCgccggGggGCgCGGg -3'
miRNA:   3'- aCGA-CGGCGUGA----------UGCGa----CaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 29528 0.69 0.617191
Target:  5'- gGCUGCagaGCGCgaagcuCGCgg--GCCCGGa -3'
miRNA:   3'- aCGACGg--CGUGau----GCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 13579 0.69 0.627394
Target:  5'- cUGCaGCCGCACcgagaGCGUgaaggaGUcGCCCGGg -3'
miRNA:   3'- -ACGaCGGCGUGa----UGCGa-----CAaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 38165 0.69 0.627394
Target:  5'- cGCgGCCGCagcacgGCUGC-CUGgagGCCUGGg -3'
miRNA:   3'- aCGaCGGCG------UGAUGcGACaa-CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 29690 0.68 0.698462
Target:  5'- cGCUGCCGCACgugGCGgcCUGcgUGgCCa- -3'
miRNA:   3'- aCGACGGCGUGa--UGC--GACa-ACgGGcc -5'
23653 5' -57.9 NC_005261.1 + 30197 0.68 0.698462
Target:  5'- gGCcGCCGCGCUggaggcggccGCGCUGgcgGCgCGa -3'
miRNA:   3'- aCGaCGGCGUGA----------UGCGACaa-CGgGCc -5'
23653 5' -57.9 NC_005261.1 + 69540 0.68 0.688406
Target:  5'- cGCUGgCGCGC-GCGCUGgggacggcgGCCCc- -3'
miRNA:   3'- aCGACgGCGUGaUGCGACaa-------CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 99667 0.68 0.688406
Target:  5'- cGCUGaCCGUcguCaGCGCgc-UGCCCGGg -3'
miRNA:   3'- aCGAC-GGCGu--GaUGCGacaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 37989 0.68 0.688406
Target:  5'- cGCgugGaCGCGCUACGC-GgcGCCCGa -3'
miRNA:   3'- aCGa--CgGCGUGAUGCGaCaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 118374 0.68 0.678303
Target:  5'- cGCUGgggCGCGCggcccgagGCGCUGgcgGCCgCGGg -3'
miRNA:   3'- aCGACg--GCGUGa-------UGCGACaa-CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 86087 0.68 0.678303
Target:  5'- aUGCU-CCGCGCguucuCGUcGgcGCCCGGg -3'
miRNA:   3'- -ACGAcGGCGUGau---GCGaCaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 90732 0.68 0.678303
Target:  5'- cGCUggGCCGCGCcugagGCGCUG--GCgCGGg -3'
miRNA:   3'- aCGA--CGGCGUGa----UGCGACaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 123903 0.68 0.678303
Target:  5'- gGCcGCCGCugUGgGgUGcgGCCCGa -3'
miRNA:   3'- aCGaCGGCGugAUgCgACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 63010 0.68 0.708463
Target:  5'- gGCgGCCGCGCccgcgcggGCGCcGgcGCCCGcGg -3'
miRNA:   3'- aCGaCGGCGUGa-------UGCGaCaaCGGGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.