miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 97135 0.7 0.546482
Target:  5'- cGCgGCCaCGCUcggagGCGCUGgcgccgGCCCGGc -3'
miRNA:   3'- aCGaCGGcGUGA-----UGCGACaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 76082 0.7 0.546482
Target:  5'- gGCUGCUGCGCcucgugGCGCUGgaGCUgGa -3'
miRNA:   3'- aCGACGGCGUGa-----UGCGACaaCGGgCc -5'
23653 5' -57.9 NC_005261.1 + 126502 0.7 0.546482
Target:  5'- aGCUGCCGCAggcgguCUGC-CUGggcGCCCGc -3'
miRNA:   3'- aCGACGGCGU------GAUGcGACaa-CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 21198 0.7 0.556459
Target:  5'- cGCgGCCGCGg-ACGCUGgc-CCCGGc -3'
miRNA:   3'- aCGaCGGCGUgaUGCGACaacGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 44961 0.7 0.566489
Target:  5'- cUGCUGCgGgACgcGCGCgaggGCCCGGg -3'
miRNA:   3'- -ACGACGgCgUGa-UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 98739 0.7 0.566489
Target:  5'- cGCgGCCGCGCggGCGUUGgccGCgCGGu -3'
miRNA:   3'- aCGaCGGCGUGa-UGCGACaa-CGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 29882 0.7 0.576564
Target:  5'- cGCUGCCGC-CaGCGCccggGCCCGcGg -3'
miRNA:   3'- aCGACGGCGuGaUGCGacaaCGGGC-C- -5'
23653 5' -57.9 NC_005261.1 + 99408 0.7 0.582629
Target:  5'- gGCUGCCGCACgagcgugaacgucACGCUGcucCCCGu -3'
miRNA:   3'- aCGACGGCGUGa------------UGCGACaacGGGCc -5'
23653 5' -57.9 NC_005261.1 + 118595 0.7 0.585666
Target:  5'- cGCcGCCGCggaGCUcGCGCUGUcggccguUGCCCuGGc -3'
miRNA:   3'- aCGaCGGCG---UGA-UGCGACA-------ACGGG-CC- -5'
23653 5' -57.9 NC_005261.1 + 75990 0.7 0.586679
Target:  5'- cGCgGCCGCcCUcGCGCUGgacGCCCuGGc -3'
miRNA:   3'- aCGaCGGCGuGA-UGCGACaa-CGGG-CC- -5'
23653 5' -57.9 NC_005261.1 + 10518 0.7 0.596826
Target:  5'- cGCUGCgggccccgcggCGCGCU-CGCUGUcGCCCc- -3'
miRNA:   3'- aCGACG-----------GCGUGAuGCGACAaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 134567 0.7 0.596826
Target:  5'- gGCggcGCCGCgGCUGCGCagGgcggGCCUGGc -3'
miRNA:   3'- aCGa--CGGCG-UGAUGCGa-Caa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 120400 0.69 0.606999
Target:  5'- aGCagaGCgGCGuCUGCGCUGagcgGCCUGGg -3'
miRNA:   3'- aCGa--CGgCGU-GAUGCGACaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 20711 0.69 0.606999
Target:  5'- cUGCUGaacuCGgGCcGCGCUGggGCUCGGc -3'
miRNA:   3'- -ACGACg---GCgUGaUGCGACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 127881 0.69 0.606999
Target:  5'- gGgaGUCGCGCcgGCGCccGUcggGCCCGGg -3'
miRNA:   3'- aCgaCGGCGUGa-UGCGa-CAa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 35570 0.69 0.617191
Target:  5'- aGCcGCCGCGCUAUcCUccaucGCCCGGa -3'
miRNA:   3'- aCGaCGGCGUGAUGcGAcaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 58271 0.69 0.617191
Target:  5'- cGCUcGCCGCGCUcacggggccgGCGCgccggGggGCgCGGg -3'
miRNA:   3'- aCGA-CGGCGUGA----------UGCGa----CaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 29528 0.69 0.617191
Target:  5'- gGCUGCagaGCGCgaagcuCGCgg--GCCCGGa -3'
miRNA:   3'- aCGACGg--CGUGau----GCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 38165 0.69 0.627394
Target:  5'- cGCgGCCGCagcacgGCUGC-CUGgagGCCUGGg -3'
miRNA:   3'- aCGaCGGCG------UGAUGcGACaa-CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 45414 0.69 0.627394
Target:  5'- cUGCUGCgGCGcCUGCGCccGccGCCCGc -3'
miRNA:   3'- -ACGACGgCGU-GAUGCGa-CaaCGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.