Results 61 - 80 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23653 | 5' | -57.9 | NC_005261.1 | + | 71609 | 0.69 | 0.627394 |
Target: 5'- cGCcGCCGCgGCccggGCGCgg--GCCCGGg -3' miRNA: 3'- aCGaCGGCG-UGa---UGCGacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 45414 | 0.69 | 0.627394 |
Target: 5'- cUGCUGCgGCGcCUGCGCccGccGCCCGc -3' miRNA: 3'- -ACGACGgCGU-GAUGCGa-CaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 38165 | 0.69 | 0.627394 |
Target: 5'- cGCgGCCGCagcacgGCUGC-CUGgagGCCUGGg -3' miRNA: 3'- aCGaCGGCG------UGAUGcGACaa-CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 13579 | 0.69 | 0.627394 |
Target: 5'- cUGCaGCCGCACcgagaGCGUgaaggaGUcGCCCGGg -3' miRNA: 3'- -ACGaCGGCGUGa----UGCGa-----CAaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 51219 | 0.69 | 0.637601 |
Target: 5'- cUGCUGCUGgGC-GCGCUaGccGCCUGGa -3' miRNA: 3'- -ACGACGGCgUGaUGCGA-CaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 133647 | 0.69 | 0.637601 |
Target: 5'- cGCcGCUGCGCgaGCGCUGcgUGCUCGc -3' miRNA: 3'- aCGaCGGCGUGa-UGCGACa-ACGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 84610 | 0.69 | 0.647803 |
Target: 5'- uUGCUGCCGUugaugaucucGCggaGCGCcuccaccagcgUGUUGuCCCGGc -3' miRNA: 3'- -ACGACGGCG----------UGa--UGCG-----------ACAAC-GGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 3598 | 0.69 | 0.657993 |
Target: 5'- cGCggGCCGCGCcaaGCaGCUcaGcUGCCCGGa -3' miRNA: 3'- aCGa-CGGCGUGa--UG-CGA--CaACGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 127691 | 0.69 | 0.657993 |
Target: 5'- cGCUGCCccgGCggcgccggaggaGCUGCGCgUGgccUGCCUGGu -3' miRNA: 3'- aCGACGG---CG------------UGAUGCG-ACa--ACGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 108207 | 0.69 | 0.657993 |
Target: 5'- aGCUGCgccagcacggCGCGCUccagcaugGCGCacgUGCCCGGc -3' miRNA: 3'- aCGACG----------GCGUGA--------UGCGacaACGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 36803 | 0.68 | 0.674251 |
Target: 5'- uUGCgccgGCCgGCGCUACGUgccccgguaugcgGUgccggcGCCCGGg -3' miRNA: 3'- -ACGa---CGG-CGUGAUGCGa------------CAa-----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 118374 | 0.68 | 0.678303 |
Target: 5'- cGCUGgggCGCGCggcccgagGCGCUGgcgGCCgCGGg -3' miRNA: 3'- aCGACg--GCGUGa-------UGCGACaa-CGG-GCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 86087 | 0.68 | 0.678303 |
Target: 5'- aUGCU-CCGCGCguucuCGUcGgcGCCCGGg -3' miRNA: 3'- -ACGAcGGCGUGau---GCGaCaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 90732 | 0.68 | 0.678303 |
Target: 5'- cGCUggGCCGCGCcugagGCGCUG--GCgCGGg -3' miRNA: 3'- aCGA--CGGCGUGa----UGCGACaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 123903 | 0.68 | 0.678303 |
Target: 5'- gGCcGCCGCugUGgGgUGcgGCCCGa -3' miRNA: 3'- aCGaCGGCGugAUgCgACaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 37989 | 0.68 | 0.688406 |
Target: 5'- cGCgugGaCGCGCUACGC-GgcGCCCGa -3' miRNA: 3'- aCGa--CgGCGUGAUGCGaCaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 99667 | 0.68 | 0.688406 |
Target: 5'- cGCUGaCCGUcguCaGCGCgc-UGCCCGGg -3' miRNA: 3'- aCGAC-GGCGu--GaUGCGacaACGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 69540 | 0.68 | 0.688406 |
Target: 5'- cGCUGgCGCGC-GCGCUGgggacggcgGCCCc- -3' miRNA: 3'- aCGACgGCGUGaUGCGACaa-------CGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 30197 | 0.68 | 0.698462 |
Target: 5'- gGCcGCCGCGCUggaggcggccGCGCUGgcgGCgCGa -3' miRNA: 3'- aCGaCGGCGUGA----------UGCGACaa-CGgGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 29690 | 0.68 | 0.698462 |
Target: 5'- cGCUGCCGCACgugGCGgcCUGcgUGgCCa- -3' miRNA: 3'- aCGACGGCGUGa--UGC--GACa-ACgGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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