miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 63010 0.68 0.708463
Target:  5'- gGCgGCCGCGCccgcgcggGCGCcGgcGCCCGcGg -3'
miRNA:   3'- aCGaCGGCGUGa-------UGCGaCaaCGGGC-C- -5'
23653 5' -57.9 NC_005261.1 + 57914 0.68 0.708463
Target:  5'- cGCggaagacgGcCCGCAC-GCGCgUGcUGCCCGGc -3'
miRNA:   3'- aCGa-------C-GGCGUGaUGCG-ACaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 101103 0.68 0.718399
Target:  5'- cGCgGCCGCGC-GCGCcuUGgcGCCCu- -3'
miRNA:   3'- aCGaCGGCGUGaUGCG--ACaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 72427 0.68 0.718399
Target:  5'- cGCUcGCCGCGCUugcccccgGCGggGgcGCCCGcGg -3'
miRNA:   3'- aCGA-CGGCGUGA--------UGCgaCaaCGGGC-C- -5'
23653 5' -57.9 NC_005261.1 + 70321 0.67 0.72728
Target:  5'- cGCUGCCGCAgUAgGCgcacgcgucgagcggGCCgGGg -3'
miRNA:   3'- aCGACGGCGUgAUgCGacaa-----------CGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 28259 0.67 0.728262
Target:  5'- gGCUGCuCGgGgggGCGCUGUUGCCg-- -3'
miRNA:   3'- aCGACG-GCgUga-UGCGACAACGGgcc -5'
23653 5' -57.9 NC_005261.1 + 31347 0.67 0.728262
Target:  5'- cGCUGCgGCG--GCGCgug-GCCUGGa -3'
miRNA:   3'- aCGACGgCGUgaUGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 31422 0.67 0.737069
Target:  5'- cGCUGCCcggggagGCGCUggcgGCGCc---GCCCGGc -3'
miRNA:   3'- aCGACGG-------CGUGA----UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 110433 0.67 0.738043
Target:  5'- cGCUGCCacgcguucccGCACcggGCGuUUGggUGCCUGGg -3'
miRNA:   3'- aCGACGG----------CGUGa--UGC-GACa-ACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 106395 0.67 0.738043
Target:  5'- cGCUGucggcgacauCCGCGCgGCGCUGcagcggGCCgCGGu -3'
miRNA:   3'- aCGAC----------GGCGUGaUGCGACaa----CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 63324 0.67 0.738043
Target:  5'- gGUcGCCGUACgagugGCGCUGcgagGCCCa- -3'
miRNA:   3'- aCGaCGGCGUGa----UGCGACaa--CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 129308 0.67 0.738043
Target:  5'- gGCgccCCGCGcCUGCGCUGgcGCCgCGu -3'
miRNA:   3'- aCGac-GGCGU-GAUGCGACaaCGG-GCc -5'
23653 5' -57.9 NC_005261.1 + 58845 0.67 0.745802
Target:  5'- cGCUGggucucCCGCACgucguaguggaaGCGCUGgggagGUCCGGg -3'
miRNA:   3'- aCGAC------GGCGUGa-----------UGCGACaa---CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 51751 0.67 0.747732
Target:  5'- gGCUGCCGCuggccgugaaGCUgGCGCUGgccggcgucGCCCu- -3'
miRNA:   3'- aCGACGGCG----------UGA-UGCGACaa-------CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 30344 0.67 0.747732
Target:  5'- gGCgGCCGCGCU-CGCg---GCCCu- -3'
miRNA:   3'- aCGaCGGCGUGAuGCGacaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 13048 0.67 0.747732
Target:  5'- cGCgggGCCGCGC-GCGCcccUGCCgGGc -3'
miRNA:   3'- aCGa--CGGCGUGaUGCGacaACGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 90013 0.67 0.747732
Target:  5'- -cCUGCC-UGCUGCGCcug-GCCCGGg -3'
miRNA:   3'- acGACGGcGUGAUGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 79386 0.67 0.75732
Target:  5'- gGUUGCgGCGCUGgaucuCGCUGUagucgagcagGCCCGu -3'
miRNA:   3'- aCGACGgCGUGAU-----GCGACAa---------CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 2665 0.67 0.75732
Target:  5'- gGCUcCCGC-C-GCGCUGggGaCCCGGc -3'
miRNA:   3'- aCGAcGGCGuGaUGCGACaaC-GGGCC- -5'
23653 5' -57.9 NC_005261.1 + 46815 0.67 0.75732
Target:  5'- cGCggaugGCgCGCGCcagGCGCgcgUGCUCGGg -3'
miRNA:   3'- aCGa----CG-GCGUGa--UGCGacaACGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.