Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23653 | 5' | -57.9 | NC_005261.1 | + | 127756 | 0.66 | 0.785387 |
Target: 5'- aGCggGCCGCgGCggGCGCgaagacGCCCGGc -3' miRNA: 3'- aCGa-CGGCG-UGa-UGCGacaa--CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 134028 | 0.66 | 0.785387 |
Target: 5'- cGCcGCCGCGCU-CGCggccaUGgCCGGc -3' miRNA: 3'- aCGaCGGCGUGAuGCGaca--ACgGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 63920 | 0.66 | 0.783552 |
Target: 5'- -cCUGCCGCACgacCGUgagcccgaaGCCCGGg -3' miRNA: 3'- acGACGGCGUGau-GCGacaa-----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 66288 | 0.67 | 0.776156 |
Target: 5'- gGCUGUCGCAgUGCGUcag-GCgCGGc -3' miRNA: 3'- aCGACGGCGUgAUGCGacaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 4151 | 0.67 | 0.776156 |
Target: 5'- cGCUGCagcagGCGCgccaGCUGcagGUCCGGg -3' miRNA: 3'- aCGACGg----CGUGaug-CGACaa-CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 88762 | 0.67 | 0.776156 |
Target: 5'- gGUgGCgGCGCUGCGCUccucgGCCCuGGc -3' miRNA: 3'- aCGaCGgCGUGAUGCGAcaa--CGGG-CC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 100723 | 0.67 | 0.776156 |
Target: 5'- cGCgGCCGCGCcGCGCgcgcGCgCGGc -3' miRNA: 3'- aCGaCGGCGUGaUGCGacaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 5133 | 0.67 | 0.776156 |
Target: 5'- gGCccGCCgGCGCUcGCGCgccucgGCCCGGc -3' miRNA: 3'- aCGa-CGG-CGUGA-UGCGacaa--CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 104833 | 0.67 | 0.776156 |
Target: 5'- cGCgggGCCGCGCcACGCggaccGCgCGGg -3' miRNA: 3'- aCGa--CGGCGUGaUGCGacaa-CGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 106360 | 0.67 | 0.776156 |
Target: 5'- cGCcGCCGCGCUGacgccgccguCGCcGUUGCCg-- -3' miRNA: 3'- aCGaCGGCGUGAU----------GCGaCAACGGgcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 117732 | 0.67 | 0.776156 |
Target: 5'- aGCgGCCGCGCgcugGCGCcGccGCCCc- -3' miRNA: 3'- aCGaCGGCGUGa---UGCGaCaaCGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 51254 | 0.67 | 0.776156 |
Target: 5'- gGCgGCCGUGCUGCuGCUGU--CCCa- -3' miRNA: 3'- aCGaCGGCGUGAUG-CGACAacGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 81196 | 0.67 | 0.773362 |
Target: 5'- gGCacgGCCGCGCggGCGCgagccggaccaccgUGgcGCCCGa -3' miRNA: 3'- aCGa--CGGCGUGa-UGCG--------------ACaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 130033 | 0.67 | 0.766798 |
Target: 5'- aUGCUGgCGuCACUacACGCg---GCCUGGu -3' miRNA: 3'- -ACGACgGC-GUGA--UGCGacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 29834 | 0.67 | 0.766798 |
Target: 5'- cGCUcGCCGaGCUGCGCgccgUGCUCGc -3' miRNA: 3'- aCGA-CGGCgUGAUGCGaca-ACGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 129055 | 0.67 | 0.766798 |
Target: 5'- cGCUGCCGCGCccUACGUguUUGgUCGa -3' miRNA: 3'- aCGACGGCGUG--AUGCGacAACgGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 118976 | 0.67 | 0.766798 |
Target: 5'- cUGCacGCCGCGCUGUGCUucUGCgUCGGg -3' miRNA: 3'- -ACGa-CGGCGUGAUGCGAcaACG-GGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 44717 | 0.67 | 0.766798 |
Target: 5'- gGCUGaCGCGCgcaggGCGCUGcaGCUgGGc -3' miRNA: 3'- aCGACgGCGUGa----UGCGACaaCGGgCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 71066 | 0.67 | 0.766798 |
Target: 5'- aGCcGCCGCGCggcggGCGg-GgcGUCCGGg -3' miRNA: 3'- aCGaCGGCGUGa----UGCgaCaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 59041 | 0.67 | 0.766798 |
Target: 5'- gUGCcGCCGCGCgagcucaGCGCgcgcgGCCgCGGa -3' miRNA: 3'- -ACGaCGGCGUGa------UGCGacaa-CGG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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