miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 29254 0.66 0.785387
Target:  5'- cGCgacggGCCGC-CgcCGCUGgaggGCCCGc -3'
miRNA:   3'- aCGa----CGGCGuGauGCGACaa--CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 29403 0.72 0.441634
Target:  5'- gGCgGCCGCgcGCUACGCgGcgGCCgCGGg -3'
miRNA:   3'- aCGaCGGCG--UGAUGCGaCaaCGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 29528 0.69 0.617191
Target:  5'- gGCUGCagaGCGCgaagcuCGCgg--GCCCGGa -3'
miRNA:   3'- aCGACGg--CGUGau----GCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 29690 0.68 0.698462
Target:  5'- cGCUGCCGCACgugGCGgcCUGcgUGgCCa- -3'
miRNA:   3'- aCGACGGCGUGa--UGC--GACa-ACgGGcc -5'
23653 5' -57.9 NC_005261.1 + 29834 0.67 0.766798
Target:  5'- cGCUcGCCGaGCUGCGCgccgUGCUCGc -3'
miRNA:   3'- aCGA-CGGCgUGAUGCGaca-ACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 29882 0.7 0.576564
Target:  5'- cGCUGCCGC-CaGCGCccggGCCCGcGg -3'
miRNA:   3'- aCGACGGCGuGaUGCGacaaCGGGC-C- -5'
23653 5' -57.9 NC_005261.1 + 29930 0.71 0.526706
Target:  5'- aGCUGgCGgaCGCUGCGCUGcgGCCUGc -3'
miRNA:   3'- aCGACgGC--GUGAUGCGACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 30197 0.68 0.698462
Target:  5'- gGCcGCCGCGCUggaggcggccGCGCUGgcgGCgCGa -3'
miRNA:   3'- aCGaCGGCGUGA----------UGCGACaa-CGgGCc -5'
23653 5' -57.9 NC_005261.1 + 30344 0.67 0.747732
Target:  5'- gGCgGCCGCGCU-CGCg---GCCCu- -3'
miRNA:   3'- aCGaCGGCGUGAuGCGacaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 30888 0.66 0.820853
Target:  5'- -cCUGCCGCccgaGCUcGgGCUGgggccGCCCGGc -3'
miRNA:   3'- acGACGGCG----UGA-UgCGACaa---CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 31347 0.67 0.728262
Target:  5'- cGCUGCgGCG--GCGCgug-GCCUGGa -3'
miRNA:   3'- aCGACGgCGUgaUGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 31422 0.67 0.737069
Target:  5'- cGCUGCCcggggagGCGCUggcgGCGCc---GCCCGGc -3'
miRNA:   3'- aCGACGG-------CGUGA----UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 32005 0.66 0.803429
Target:  5'- gUGCcGCCGCGCgaguaccggcaGCGCgUGcUGCCgCGGc -3'
miRNA:   3'- -ACGaCGGCGUGa----------UGCG-ACaACGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 32064 0.73 0.423791
Target:  5'- ---gGCCGCGCagagcgcgGCGCUGggGCUCGGg -3'
miRNA:   3'- acgaCGGCGUGa-------UGCGACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 32189 0.71 0.507203
Target:  5'- gGCgGCgCGCGCUGgaGCUGgcGCCCGa -3'
miRNA:   3'- aCGaCG-GCGUGAUg-CGACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 34669 0.66 0.794481
Target:  5'- cUGCUGUuuguggcagCGCGCUGCGUgacgGUggGCCCc- -3'
miRNA:   3'- -ACGACG---------GCGUGAUGCGa---CAa-CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 35570 0.69 0.617191
Target:  5'- aGCcGCCGCGCUAUcCUccaucGCCCGGa -3'
miRNA:   3'- aCGaCGGCGUGAUGcGAcaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 36803 0.68 0.674251
Target:  5'- uUGCgccgGCCgGCGCUACGUgccccgguaugcgGUgccggcGCCCGGg -3'
miRNA:   3'- -ACGa---CGG-CGUGAUGCGa------------CAa-----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 37989 0.68 0.688406
Target:  5'- cGCgugGaCGCGCUACGC-GgcGCCCGa -3'
miRNA:   3'- aCGa--CgGCGUGAUGCGaCaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 38165 0.69 0.627394
Target:  5'- cGCgGCCGCagcacgGCUGC-CUGgagGCCUGGg -3'
miRNA:   3'- aCGaCGGCG------UGAUGcGACaa-CGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.