miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 44470 0.81 0.1463
Target:  5'- aGCUGCUGCGCUGCuucaaGCUG--GCCCGGa -3'
miRNA:   3'- aCGACGGCGUGAUG-----CGACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 44717 0.67 0.766798
Target:  5'- gGCUGaCGCGCgcaggGCGCUGcaGCUgGGc -3'
miRNA:   3'- aCGACgGCGUGa----UGCGACaaCGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 44961 0.7 0.566489
Target:  5'- cUGCUGCgGgACgcGCGCgaggGCCCGGg -3'
miRNA:   3'- -ACGACGgCgUGa-UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 45414 0.69 0.627394
Target:  5'- cUGCUGCgGCGcCUGCGCccGccGCCCGc -3'
miRNA:   3'- -ACGACGgCGU-GAUGCGa-CaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 45537 1.09 0.001536
Target:  5'- gUGCUGCCGCACUACGCUGUUGCCCGGc -3'
miRNA:   3'- -ACGACGGCGUGAUGCGACAACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 46815 0.67 0.75732
Target:  5'- cGCggaugGCgCGCGCcagGCGCgcgUGCUCGGg -3'
miRNA:   3'- aCGa----CG-GCGUGa--UGCGacaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 50739 0.66 0.794481
Target:  5'- cGUcGCCGCAC-GCGCUcgcGCCCGc -3'
miRNA:   3'- aCGaCGGCGUGaUGCGAcaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 51219 0.69 0.637601
Target:  5'- cUGCUGCUGgGC-GCGCUaGccGCCUGGa -3'
miRNA:   3'- -ACGACGGCgUGaUGCGA-CaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 51254 0.67 0.776156
Target:  5'- gGCgGCCGUGCUGCuGCUGU--CCCa- -3'
miRNA:   3'- aCGaCGGCGUGAUG-CGACAacGGGcc -5'
23653 5' -57.9 NC_005261.1 + 51623 0.73 0.389438
Target:  5'- -cCUGUCGCGCUacACGCaagUGcUGCCCGGg -3'
miRNA:   3'- acGACGGCGUGA--UGCG---ACaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 51751 0.67 0.747732
Target:  5'- gGCUGCCGCuggccgugaaGCUgGCGCUGgccggcgucGCCCu- -3'
miRNA:   3'- aCGACGGCG----------UGA-UGCGACaa-------CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 51879 0.67 0.75732
Target:  5'- aGC-GCCGCGCggcagcagcgGCGCgcuacaucGCCCGGg -3'
miRNA:   3'- aCGaCGGCGUGa---------UGCGacaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 52352 0.66 0.794481
Target:  5'- cGCUGCCGC-CggaGCcGgaGCCCGcGg -3'
miRNA:   3'- aCGACGGCGuGaugCGaCaaCGGGC-C- -5'
23653 5' -57.9 NC_005261.1 + 53110 0.66 0.820853
Target:  5'- cGCcGCgGCGCUGCGCgcc-GCCaacaGGg -3'
miRNA:   3'- aCGaCGgCGUGAUGCGacaaCGGg---CC- -5'
23653 5' -57.9 NC_005261.1 + 53533 0.66 0.80254
Target:  5'- gGCUGCCGUGUUGCGCUcuucggccgcgccGcgGCCCaGGc -3'
miRNA:   3'- aCGACGGCGUGAUGCGA-------------CaaCGGG-CC- -5'
23653 5' -57.9 NC_005261.1 + 54141 0.73 0.42291
Target:  5'- gGCacGCCGCACgcggccgUGCGCgggGUUGCCgGGa -3'
miRNA:   3'- aCGa-CGGCGUG-------AUGCGa--CAACGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 55745 0.71 0.497568
Target:  5'- gUGCUGCCGgACggccucgACGCgcgccgccGCCCGGa -3'
miRNA:   3'- -ACGACGGCgUGa------UGCGacaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 56859 0.66 0.820853
Target:  5'- cUGgUGCCGCugaucGCGCUGgcGCUCGc -3'
miRNA:   3'- -ACgACGGCGuga--UGCGACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 57914 0.68 0.708463
Target:  5'- cGCggaagacgGcCCGCAC-GCGCgUGcUGCCCGGc -3'
miRNA:   3'- aCGa-------C-GGCGUGaUGCG-ACaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 58271 0.69 0.617191
Target:  5'- cGCUcGCCGCGCUcacggggccgGCGCgccggGggGCgCGGg -3'
miRNA:   3'- aCGA-CGGCGUGA----------UGCGa----CaaCGgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.