miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 58845 0.67 0.745802
Target:  5'- cGCUGggucucCCGCACgucguaguggaaGCGCUGgggagGUCCGGg -3'
miRNA:   3'- aCGAC------GGCGUGa-----------UGCGACaa---CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 59041 0.67 0.766798
Target:  5'- gUGCcGCCGCGCgagcucaGCGCgcgcgGCCgCGGa -3'
miRNA:   3'- -ACGaCGGCGUGa------UGCGacaa-CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 59408 0.76 0.284351
Target:  5'- gGCUcGCCgGCGCcgGCGCUGUcgcgcgGCCCGGc -3'
miRNA:   3'- aCGA-CGG-CGUGa-UGCGACAa-----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 62221 0.66 0.812222
Target:  5'- cGCgGCCGCGuCUGCGCccucgcgGUgcugcacGUCCGGc -3'
miRNA:   3'- aCGaCGGCGU-GAUGCGa------CAa------CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 62299 0.66 0.820853
Target:  5'- gGC-GCCGCGCggGCGCgcgGcgGCCCc- -3'
miRNA:   3'- aCGaCGGCGUGa-UGCGa--CaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 63010 0.68 0.708463
Target:  5'- gGCgGCCGCGCccgcgcggGCGCcGgcGCCCGcGg -3'
miRNA:   3'- aCGaCGGCGUGa-------UGCGaCaaCGGGC-C- -5'
23653 5' -57.9 NC_005261.1 + 63324 0.67 0.738043
Target:  5'- gGUcGCCGUACgagugGCGCUGcgagGCCCa- -3'
miRNA:   3'- aCGaCGGCGUGa----UGCGACaa--CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 63920 0.66 0.783552
Target:  5'- -cCUGCCGCACgacCGUgagcccgaaGCCCGGg -3'
miRNA:   3'- acGACGGCGUGau-GCGacaa-----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 64072 0.73 0.389438
Target:  5'- gGCUGCCGCACggugGCGUaguaguUGgcGCCCa- -3'
miRNA:   3'- aCGACGGCGUGa---UGCG------ACaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 66288 0.67 0.776156
Target:  5'- gGCUGUCGCAgUGCGUcag-GCgCGGc -3'
miRNA:   3'- aCGACGGCGUgAUGCGacaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 67324 0.66 0.818281
Target:  5'- cGCcGCCGCGCUcagccgcaggaacaGCGCcgg-GCCCGc -3'
miRNA:   3'- aCGaCGGCGUGA--------------UGCGacaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 69361 0.66 0.803429
Target:  5'- cGCgGCCGCGCgcGCGCUGgacCUCGa -3'
miRNA:   3'- aCGaCGGCGUGa-UGCGACaacGGGCc -5'
23653 5' -57.9 NC_005261.1 + 69540 0.68 0.688406
Target:  5'- cGCUGgCGCGC-GCGCUGgggacggcgGCCCc- -3'
miRNA:   3'- aCGACgGCGUGaUGCGACaa-------CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 70321 0.67 0.72728
Target:  5'- cGCUGCCGCAgUAgGCgcacgcgucgagcggGCCgGGg -3'
miRNA:   3'- aCGACGGCGUgAUgCGacaa-----------CGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 71066 0.67 0.766798
Target:  5'- aGCcGCCGCGCggcggGCGg-GgcGUCCGGg -3'
miRNA:   3'- aCGaCGGCGUGa----UGCgaCaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 71609 0.69 0.627394
Target:  5'- cGCcGCCGCgGCccggGCGCgg--GCCCGGg -3'
miRNA:   3'- aCGaCGGCG-UGa---UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 71940 0.71 0.498528
Target:  5'- gGCUGCCGCGCgccccacuggcgucgGCGC-GggGCgCGGa -3'
miRNA:   3'- aCGACGGCGUGa--------------UGCGaCaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 72427 0.68 0.718399
Target:  5'- cGCUcGCCGCGCUugcccccgGCGggGgcGCCCGcGg -3'
miRNA:   3'- aCGA-CGGCGUGA--------UGCgaCaaCGGGC-C- -5'
23653 5' -57.9 NC_005261.1 + 72776 0.71 0.536562
Target:  5'- gGCgGCCGCGC-ACGCguccGggGCCgCGGa -3'
miRNA:   3'- aCGaCGGCGUGaUGCGa---CaaCGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 73147 0.74 0.364899
Target:  5'- gGCUcgcGCCGCcagGCgGCGUUGUUGCUCGGc -3'
miRNA:   3'- aCGA---CGGCG---UGaUGCGACAACGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.