Results 101 - 120 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23653 | 5' | -57.9 | NC_005261.1 | + | 94847 | 0.66 | 0.812222 |
Target: 5'- cGCgccugGCCucgGCGCUcGCGCacg-GCCCGGg -3' miRNA: 3'- aCGa----CGG---CGUGA-UGCGacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 96339 | 0.67 | 0.75732 |
Target: 5'- cGCgGCCGCGCgcaccugACGCccUGacugGCCUGGc -3' miRNA: 3'- aCGaCGGCGUGa------UGCG--ACaa--CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 96660 | 0.66 | 0.820853 |
Target: 5'- aGCaGCaGCGCcagaACGCUGaUGCCCGu -3' miRNA: 3'- aCGaCGgCGUGa---UGCGACaACGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 97135 | 0.7 | 0.546482 |
Target: 5'- cGCgGCCaCGCUcggagGCGCUGgcgccgGCCCGGc -3' miRNA: 3'- aCGaCGGcGUGA-----UGCGACaa----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 97213 | 0.7 | 0.546482 |
Target: 5'- cGCgGCCaCGCUcggagGCGCUGgcgccgGCCCGGc -3' miRNA: 3'- aCGaCGGcGUGA-----UGCGACaa----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 97401 | 0.71 | 0.507203 |
Target: 5'- cGcCUGCCGCggGCUugGCgGgcGCgCCGGg -3' miRNA: 3'- aC-GACGGCG--UGAugCGaCaaCG-GGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 98739 | 0.7 | 0.566489 |
Target: 5'- cGCgGCCGCGCggGCGUUGgccGCgCGGu -3' miRNA: 3'- aCGaCGGCGUGa-UGCGACaa-CGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 99408 | 0.7 | 0.582629 |
Target: 5'- gGCUGCCGCACgagcgugaacgucACGCUGcucCCCGu -3' miRNA: 3'- aCGACGGCGUGa------------UGCGACaacGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 99667 | 0.68 | 0.688406 |
Target: 5'- cGCUGaCCGUcguCaGCGCgc-UGCCCGGg -3' miRNA: 3'- aCGAC-GGCGu--GaUGCGacaACGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 99863 | 0.66 | 0.803429 |
Target: 5'- gGCcGCCGCGCgcCGCcGccGCUCGGc -3' miRNA: 3'- aCGaCGGCGUGauGCGaCaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 100723 | 0.67 | 0.776156 |
Target: 5'- cGCgGCCGCGCcGCGCgcgcGCgCGGc -3' miRNA: 3'- aCGaCGGCGUGaUGCGacaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 101103 | 0.68 | 0.718399 |
Target: 5'- cGCgGCCGCGC-GCGCcuUGgcGCCCu- -3' miRNA: 3'- aCGaCGGCGUGaUGCG--ACaaCGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 101145 | 0.71 | 0.516918 |
Target: 5'- gGCUGCCGCGCggcgGCGCgcc-GCCgCGa -3' miRNA: 3'- aCGACGGCGUGa---UGCGacaaCGG-GCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 102428 | 0.66 | 0.794481 |
Target: 5'- cUGCgcgGCCGC-CUccucgGCGCgcc-GCCCGGc -3' miRNA: 3'- -ACGa--CGGCGuGA-----UGCGacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 102534 | 0.66 | 0.812222 |
Target: 5'- aGCUugGCCGC-CUGCgGCcccaGgcGCCCGGc -3' miRNA: 3'- aCGA--CGGCGuGAUG-CGa---CaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 102940 | 0.66 | 0.785387 |
Target: 5'- cGCcGCCGcCGCUGCGgCgGcgGCCgCGGg -3' miRNA: 3'- aCGaCGGC-GUGAUGC-GaCaaCGG-GCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 104833 | 0.67 | 0.776156 |
Target: 5'- cGCgggGCCGCGCcACGCggaccGCgCGGg -3' miRNA: 3'- aCGa--CGGCGUGaUGCGacaa-CGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 106360 | 0.67 | 0.776156 |
Target: 5'- cGCcGCCGCGCUGacgccgccguCGCcGUUGCCg-- -3' miRNA: 3'- aCGaCGGCGUGAU----------GCGaCAACGGgcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 106395 | 0.67 | 0.738043 |
Target: 5'- cGCUGucggcgacauCCGCGCgGCGCUGcagcggGCCgCGGu -3' miRNA: 3'- aCGAC----------GGCGUGaUGCGACaa----CGG-GCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 106585 | 0.66 | 0.803429 |
Target: 5'- gGCcGCCGCGCgGCGCUccu-CCUGGa -3' miRNA: 3'- aCGaCGGCGUGaUGCGAcaacGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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