miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 123903 0.68 0.678303
Target:  5'- gGCcGCCGCugUGgGgUGcgGCCCGa -3'
miRNA:   3'- aCGaCGGCGugAUgCgACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 122302 0.72 0.478549
Target:  5'- cGCUGCCGCAg-GCGac---GCCCGGg -3'
miRNA:   3'- aCGACGGCGUgaUGCgacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 120400 0.69 0.606999
Target:  5'- aGCagaGCgGCGuCUGCGCUGagcgGCCUGGg -3'
miRNA:   3'- aCGa--CGgCGU-GAUGCGACaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 119059 0.72 0.459895
Target:  5'- cGCgGCCGCGCgugUGCUuucGUgGCCCGGg -3'
miRNA:   3'- aCGaCGGCGUGau-GCGA---CAaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 118976 0.67 0.766798
Target:  5'- cUGCacGCCGCGCUGUGCUucUGCgUCGGg -3'
miRNA:   3'- -ACGa-CGGCGUGAUGCGAcaACG-GGCC- -5'
23653 5' -57.9 NC_005261.1 + 118595 0.7 0.585666
Target:  5'- cGCcGCCGCggaGCUcGCGCUGUcggccguUGCCCuGGc -3'
miRNA:   3'- aCGaCGGCG---UGA-UGCGACA-------ACGGG-CC- -5'
23653 5' -57.9 NC_005261.1 + 118547 0.66 0.794481
Target:  5'- cUGCgGCgCGCGCgaggACGCcg-UGCCCGc -3'
miRNA:   3'- -ACGaCG-GCGUGa---UGCGacaACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 118415 0.72 0.441634
Target:  5'- cGCaGCCGCGCUG-GCUGUcgccGCCgCGGa -3'
miRNA:   3'- aCGaCGGCGUGAUgCGACAa---CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 118374 0.68 0.678303
Target:  5'- cGCUGgggCGCGCggcccgagGCGCUGgcgGCCgCGGg -3'
miRNA:   3'- aCGACg--GCGUGa-------UGCGACaa-CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 118204 0.75 0.333129
Target:  5'- cGcCUGCCGCGCUgcgcgggGCGCUGacgGCCgCGGc -3'
miRNA:   3'- aC-GACGGCGUGA-------UGCGACaa-CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 118079 0.71 0.497568
Target:  5'- cGCaGCCGCGCUcgucUGCUGgcgGCCCGc -3'
miRNA:   3'- aCGaCGGCGUGAu---GCGACaa-CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 118004 0.72 0.472913
Target:  5'- gGCgGCgGCGCUggACGCUGUcggacgcacgcgggGCCCGGc -3'
miRNA:   3'- aCGaCGgCGUGA--UGCGACAa-------------CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 117732 0.67 0.776156
Target:  5'- aGCgGCCGCGCgcugGCGCcGccGCCCc- -3'
miRNA:   3'- aCGaCGGCGUGa---UGCGaCaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 116604 0.66 0.803429
Target:  5'- aUGCUGCCGCAgccCU-CGCacc-GCCCGc -3'
miRNA:   3'- -ACGACGGCGU---GAuGCGacaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 113583 0.74 0.381139
Target:  5'- gGCcGCCGCGCUGgGCgaccucgcGCCCGGg -3'
miRNA:   3'- aCGaCGGCGUGAUgCGacaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 113303 0.72 0.478549
Target:  5'- cGCUGCCGCGg-GC-CUGg-GCCCGGc -3'
miRNA:   3'- aCGACGGCGUgaUGcGACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 112908 0.66 0.803429
Target:  5'- -cCUGCCGCGCUGCGUgc--GCgaGGg -3'
miRNA:   3'- acGACGGCGUGAUGCGacaaCGggCC- -5'
23653 5' -57.9 NC_005261.1 + 111757 0.71 0.516918
Target:  5'- gGCaGCUcguGCAcCUGCGCUGcgcGCCCGGg -3'
miRNA:   3'- aCGaCGG---CGU-GAUGCGACaa-CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 111006 0.66 0.812222
Target:  5'- cGCUGCCGCACgacuCGCcgcggGUcaccUGCCg-- -3'
miRNA:   3'- aCGACGGCGUGau--GCGa----CA----ACGGgcc -5'
23653 5' -57.9 NC_005261.1 + 110926 0.69 0.627394
Target:  5'- -cCUGCCGCGCUgggcaccgaGCGCc---GCCCGGc -3'
miRNA:   3'- acGACGGCGUGA---------UGCGacaaCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.