miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 110433 0.67 0.738043
Target:  5'- cGCUGCCacgcguucccGCACcggGCGuUUGggUGCCUGGg -3'
miRNA:   3'- aCGACGG----------CGUGa--UGC-GACa-ACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 110373 0.66 0.820853
Target:  5'- gGCgaccGCCGCAUgGCGCUGcgGCUgGa -3'
miRNA:   3'- aCGa---CGGCGUGaUGCGACaaCGGgCc -5'
23653 5' -57.9 NC_005261.1 + 108207 0.69 0.657993
Target:  5'- aGCUGCgccagcacggCGCGCUccagcaugGCGCacgUGCCCGGc -3'
miRNA:   3'- aCGACG----------GCGUGA--------UGCGacaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 107825 0.66 0.803429
Target:  5'- aGCgGCCGC-CgcCGCcucUGCCCGGu -3'
miRNA:   3'- aCGaCGGCGuGauGCGacaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 107718 0.74 0.349144
Target:  5'- cGCUGCCGCggcaggcgGCUGCGCcucgGCCgCGGg -3'
miRNA:   3'- aCGACGGCG--------UGAUGCGacaaCGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 106585 0.66 0.803429
Target:  5'- gGCcGCCGCGCgGCGCUccu-CCUGGa -3'
miRNA:   3'- aCGaCGGCGUGaUGCGAcaacGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 106395 0.67 0.738043
Target:  5'- cGCUGucggcgacauCCGCGCgGCGCUGcagcggGCCgCGGu -3'
miRNA:   3'- aCGAC----------GGCGUGaUGCGACaa----CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 106360 0.67 0.776156
Target:  5'- cGCcGCCGCGCUGacgccgccguCGCcGUUGCCg-- -3'
miRNA:   3'- aCGaCGGCGUGAU----------GCGaCAACGGgcc -5'
23653 5' -57.9 NC_005261.1 + 104833 0.67 0.776156
Target:  5'- cGCgggGCCGCGCcACGCggaccGCgCGGg -3'
miRNA:   3'- aCGa--CGGCGUGaUGCGacaa-CGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 102940 0.66 0.785387
Target:  5'- cGCcGCCGcCGCUGCGgCgGcgGCCgCGGg -3'
miRNA:   3'- aCGaCGGC-GUGAUGC-GaCaaCGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 102534 0.66 0.812222
Target:  5'- aGCUugGCCGC-CUGCgGCcccaGgcGCCCGGc -3'
miRNA:   3'- aCGA--CGGCGuGAUG-CGa---CaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 102428 0.66 0.794481
Target:  5'- cUGCgcgGCCGC-CUccucgGCGCgcc-GCCCGGc -3'
miRNA:   3'- -ACGa--CGGCGuGA-----UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 101145 0.71 0.516918
Target:  5'- gGCUGCCGCGCggcgGCGCgcc-GCCgCGa -3'
miRNA:   3'- aCGACGGCGUGa---UGCGacaaCGG-GCc -5'
23653 5' -57.9 NC_005261.1 + 101103 0.68 0.718399
Target:  5'- cGCgGCCGCGC-GCGCcuUGgcGCCCu- -3'
miRNA:   3'- aCGaCGGCGUGaUGCG--ACaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 100723 0.67 0.776156
Target:  5'- cGCgGCCGCGCcGCGCgcgcGCgCGGc -3'
miRNA:   3'- aCGaCGGCGUGaUGCGacaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 99863 0.66 0.803429
Target:  5'- gGCcGCCGCGCgcCGCcGccGCUCGGc -3'
miRNA:   3'- aCGaCGGCGUGauGCGaCaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 99667 0.68 0.688406
Target:  5'- cGCUGaCCGUcguCaGCGCgc-UGCCCGGg -3'
miRNA:   3'- aCGAC-GGCGu--GaUGCGacaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 99408 0.7 0.582629
Target:  5'- gGCUGCCGCACgagcgugaacgucACGCUGcucCCCGu -3'
miRNA:   3'- aCGACGGCGUGa------------UGCGACaacGGGCc -5'
23653 5' -57.9 NC_005261.1 + 98739 0.7 0.566489
Target:  5'- cGCgGCCGCGCggGCGUUGgccGCgCGGu -3'
miRNA:   3'- aCGaCGGCGUGa-UGCGACaa-CGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 97401 0.71 0.507203
Target:  5'- cGcCUGCCGCggGCUugGCgGgcGCgCCGGg -3'
miRNA:   3'- aC-GACGGCG--UGAugCGaCaaCG-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.