miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 97213 0.7 0.546482
Target:  5'- cGCgGCCaCGCUcggagGCGCUGgcgccgGCCCGGc -3'
miRNA:   3'- aCGaCGGcGUGA-----UGCGACaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 97135 0.7 0.546482
Target:  5'- cGCgGCCaCGCUcggagGCGCUGgcgccgGCCCGGc -3'
miRNA:   3'- aCGaCGGcGUGA-----UGCGACaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 96660 0.66 0.820853
Target:  5'- aGCaGCaGCGCcagaACGCUGaUGCCCGu -3'
miRNA:   3'- aCGaCGgCGUGa---UGCGACaACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 96339 0.67 0.75732
Target:  5'- cGCgGCCGCGCgcaccugACGCccUGacugGCCUGGc -3'
miRNA:   3'- aCGaCGGCGUGa------UGCG--ACaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 94847 0.66 0.812222
Target:  5'- cGCgccugGCCucgGCGCUcGCGCacg-GCCCGGg -3'
miRNA:   3'- aCGa----CGG---CGUGA-UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 92598 0.67 0.766798
Target:  5'- cGCaGCCGCuCgcgGCGCg--UGCCgGGg -3'
miRNA:   3'- aCGaCGGCGuGa--UGCGacaACGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 90732 0.68 0.678303
Target:  5'- cGCUggGCCGCGCcugagGCGCUG--GCgCGGg -3'
miRNA:   3'- aCGA--CGGCGUGa----UGCGACaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 90013 0.67 0.747732
Target:  5'- -cCUGCC-UGCUGCGCcug-GCCCGGg -3'
miRNA:   3'- acGACGGcGUGAUGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 88762 0.67 0.776156
Target:  5'- gGUgGCgGCGCUGCGCUccucgGCCCuGGc -3'
miRNA:   3'- aCGaCGgCGUGAUGCGAcaa--CGGG-CC- -5'
23653 5' -57.9 NC_005261.1 + 87941 0.66 0.803429
Target:  5'- cUGgaGCCGCGCgcCGCcacgGCCCGc -3'
miRNA:   3'- -ACgaCGGCGUGauGCGacaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 86087 0.68 0.678303
Target:  5'- aUGCU-CCGCGCguucuCGUcGgcGCCCGGg -3'
miRNA:   3'- -ACGAcGGCGUGau---GCGaCaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 84818 0.72 0.477608
Target:  5'- cGCUGCCGUugUauugcugAUGCUGagGCCCa- -3'
miRNA:   3'- aCGACGGCGugA-------UGCGACaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 84785 0.66 0.820853
Target:  5'- aGUUGCC-CGCcuggaagACGCgguUGUUGCCCGn -3'
miRNA:   3'- aCGACGGcGUGa------UGCG---ACAACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 84610 0.69 0.647803
Target:  5'- uUGCUGCCGUugaugaucucGCggaGCGCcuccaccagcgUGUUGuCCCGGc -3'
miRNA:   3'- -ACGACGGCG----------UGa--UGCG-----------ACAAC-GGGCC- -5'
23653 5' -57.9 NC_005261.1 + 83851 0.66 0.820853
Target:  5'- cGCgGCCcCGCUGgGCUGggccgGgCCGGa -3'
miRNA:   3'- aCGaCGGcGUGAUgCGACaa---CgGGCC- -5'
23653 5' -57.9 NC_005261.1 + 81372 0.69 0.627394
Target:  5'- gGC-GCCGgGCU-CGCUGgggGCgCCGGg -3'
miRNA:   3'- aCGaCGGCgUGAuGCGACaa-CG-GGCC- -5'
23653 5' -57.9 NC_005261.1 + 81196 0.67 0.773362
Target:  5'- gGCacgGCCGCGCggGCGCgagccggaccaccgUGgcGCCCGa -3'
miRNA:   3'- aCGa--CGGCGUGa-UGCG--------------ACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 79386 0.67 0.75732
Target:  5'- gGUUGCgGCGCUGgaucuCGCUGUagucgagcagGCCCGu -3'
miRNA:   3'- aCGACGgCGUGAU-----GCGACAa---------CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 77073 0.72 0.459895
Target:  5'- cGgUGCCGCGCgagGCGCUG--GCgCGGa -3'
miRNA:   3'- aCgACGGCGUGa--UGCGACaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 76597 0.66 0.803429
Target:  5'- gGgUGgCGCGC-GCGCUGccGCCCGc -3'
miRNA:   3'- aCgACgGCGUGaUGCGACaaCGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.