Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23653 | 5' | -57.9 | NC_005261.1 | + | 76082 | 0.7 | 0.546482 |
Target: 5'- gGCUGCUGCGCcucgugGCGCUGgaGCUgGa -3' miRNA: 3'- aCGACGGCGUGa-----UGCGACaaCGGgCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 75990 | 0.7 | 0.586679 |
Target: 5'- cGCgGCCGCcCUcGCGCUGgacGCCCuGGc -3' miRNA: 3'- aCGaCGGCGuGA-UGCGACaa-CGGG-CC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 74702 | 0.67 | 0.766798 |
Target: 5'- gGCcGCCGCGCggGCGCggaaccggGCCgCGGc -3' miRNA: 3'- aCGaCGGCGUGa-UGCGacaa----CGG-GCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 74060 | 0.77 | 0.240813 |
Target: 5'- gGCUGCgGCAgCUGCGCgacgcgGCCCGGc -3' miRNA: 3'- aCGACGgCGU-GAUGCGacaa--CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 73810 | 0.66 | 0.794481 |
Target: 5'- cGCgcagaaGCCGCGCccGCGCcua-GCCCGGc -3' miRNA: 3'- aCGa-----CGGCGUGa-UGCGacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 73147 | 0.74 | 0.364899 |
Target: 5'- gGCUcgcGCCGCcagGCgGCGUUGUUGCUCGGc -3' miRNA: 3'- aCGA---CGGCG---UGaUGCGACAACGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 72776 | 0.71 | 0.536562 |
Target: 5'- gGCgGCCGCGC-ACGCguccGggGCCgCGGa -3' miRNA: 3'- aCGaCGGCGUGaUGCGa---CaaCGG-GCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 72427 | 0.68 | 0.718399 |
Target: 5'- cGCUcGCCGCGCUugcccccgGCGggGgcGCCCGcGg -3' miRNA: 3'- aCGA-CGGCGUGA--------UGCgaCaaCGGGC-C- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 71940 | 0.71 | 0.498528 |
Target: 5'- gGCUGCCGCGCgccccacuggcgucgGCGC-GggGCgCGGa -3' miRNA: 3'- aCGACGGCGUGa--------------UGCGaCaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 71609 | 0.69 | 0.627394 |
Target: 5'- cGCcGCCGCgGCccggGCGCgg--GCCCGGg -3' miRNA: 3'- aCGaCGGCG-UGa---UGCGacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 71066 | 0.67 | 0.766798 |
Target: 5'- aGCcGCCGCGCggcggGCGg-GgcGUCCGGg -3' miRNA: 3'- aCGaCGGCGUGa----UGCgaCaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 70321 | 0.67 | 0.72728 |
Target: 5'- cGCUGCCGCAgUAgGCgcacgcgucgagcggGCCgGGg -3' miRNA: 3'- aCGACGGCGUgAUgCGacaa-----------CGGgCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 69540 | 0.68 | 0.688406 |
Target: 5'- cGCUGgCGCGC-GCGCUGgggacggcgGCCCc- -3' miRNA: 3'- aCGACgGCGUGaUGCGACaa-------CGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 69361 | 0.66 | 0.803429 |
Target: 5'- cGCgGCCGCGCgcGCGCUGgacCUCGa -3' miRNA: 3'- aCGaCGGCGUGa-UGCGACaacGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 67324 | 0.66 | 0.818281 |
Target: 5'- cGCcGCCGCGCUcagccgcaggaacaGCGCcgg-GCCCGc -3' miRNA: 3'- aCGaCGGCGUGA--------------UGCGacaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 66288 | 0.67 | 0.776156 |
Target: 5'- gGCUGUCGCAgUGCGUcag-GCgCGGc -3' miRNA: 3'- aCGACGGCGUgAUGCGacaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 64072 | 0.73 | 0.389438 |
Target: 5'- gGCUGCCGCACggugGCGUaguaguUGgcGCCCa- -3' miRNA: 3'- aCGACGGCGUGa---UGCG------ACaaCGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 63920 | 0.66 | 0.783552 |
Target: 5'- -cCUGCCGCACgacCGUgagcccgaaGCCCGGg -3' miRNA: 3'- acGACGGCGUGau-GCGacaa-----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 63324 | 0.67 | 0.738043 |
Target: 5'- gGUcGCCGUACgagugGCGCUGcgagGCCCa- -3' miRNA: 3'- aCGaCGGCGUGa----UGCGACaa--CGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 63010 | 0.68 | 0.708463 |
Target: 5'- gGCgGCCGCGCccgcgcggGCGCcGgcGCCCGcGg -3' miRNA: 3'- aCGaCGGCGUGa-------UGCGaCaaCGGGC-C- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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