Results 61 - 80 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23653 | 5' | -57.9 | NC_005261.1 | + | 3810 | 0.72 | 0.450714 |
Target: 5'- cGCaGCCGCucgcGCGCUGccgcggGCCCGGg -3' miRNA: 3'- aCGaCGGCGuga-UGCGACaa----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 77073 | 0.72 | 0.459895 |
Target: 5'- cGgUGCCGCGCgagGCGCUG--GCgCGGa -3' miRNA: 3'- aCgACGGCGUGa--UGCGACaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 97401 | 0.71 | 0.507203 |
Target: 5'- cGcCUGCCGCggGCUugGCgGgcGCgCCGGg -3' miRNA: 3'- aC-GACGGCG--UGAugCGaCaaCG-GGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 111757 | 0.71 | 0.516918 |
Target: 5'- gGCaGCUcguGCAcCUGCGCUGcgcGCCCGGg -3' miRNA: 3'- aCGaCGG---CGU-GAUGCGACaa-CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 101145 | 0.71 | 0.516918 |
Target: 5'- gGCUGCCGCGCggcgGCGCgcc-GCCgCGa -3' miRNA: 3'- aCGACGGCGUGa---UGCGacaaCGG-GCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 22819 | 0.71 | 0.526706 |
Target: 5'- cGCUGCCGC-CgcCGCcGUUGgCgCCGGg -3' miRNA: 3'- aCGACGGCGuGauGCGaCAAC-G-GGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 29930 | 0.71 | 0.526706 |
Target: 5'- aGCUGgCGgaCGCUGCGCUGcgGCCUGc -3' miRNA: 3'- aCGACgGC--GUGAUGCGACaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 134498 | 0.71 | 0.526706 |
Target: 5'- cGCUGCUGCACUACGagcacaGCCUGc -3' miRNA: 3'- aCGACGGCGUGAUGCgacaa-CGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 72776 | 0.71 | 0.536562 |
Target: 5'- gGCgGCCGCGC-ACGCguccGggGCCgCGGa -3' miRNA: 3'- aCGaCGGCGUGaUGCGa---CaaCGG-GCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 126502 | 0.7 | 0.546482 |
Target: 5'- aGCUGCCGCAggcgguCUGC-CUGggcGCCCGc -3' miRNA: 3'- aCGACGGCGU------GAUGcGACaa-CGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 32189 | 0.71 | 0.507203 |
Target: 5'- gGCgGCgCGCGCUGgaGCUGgcGCCCGa -3' miRNA: 3'- aCGaCG-GCGUGAUg-CGACaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 71940 | 0.71 | 0.498528 |
Target: 5'- gGCUGCCGCGCgccccacuggcgucgGCGC-GggGCgCGGa -3' miRNA: 3'- aCGACGGCGUGa--------------UGCGaCaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 119059 | 0.72 | 0.459895 |
Target: 5'- cGCgGCCGCGCgugUGCUuucGUgGCCCGGg -3' miRNA: 3'- aCGaCGGCGUGau-GCGA---CAaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 118004 | 0.72 | 0.472913 |
Target: 5'- gGCgGCgGCGCUggACGCUGUcggacgcacgcgggGCCCGGc -3' miRNA: 3'- aCGaCGgCGUGA--UGCGACAa-------------CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 84818 | 0.72 | 0.477608 |
Target: 5'- cGCUGCCGUugUauugcugAUGCUGagGCCCa- -3' miRNA: 3'- aCGACGGCGugA-------UGCGACaaCGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 113303 | 0.72 | 0.478549 |
Target: 5'- cGCUGCCGCGg-GC-CUGg-GCCCGGc -3' miRNA: 3'- aCGACGGCGUgaUGcGACaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 122302 | 0.72 | 0.478549 |
Target: 5'- cGCUGCCGCAg-GCGac---GCCCGGg -3' miRNA: 3'- aCGACGGCGUgaUGCgacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 133356 | 0.72 | 0.491826 |
Target: 5'- cGCUGCCGCGCagggcuucggcugccUGCGCgcg-GCCCa- -3' miRNA: 3'- aCGACGGCGUG---------------AUGCGacaaCGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 55745 | 0.71 | 0.497568 |
Target: 5'- gUGCUGCCGgACggccucgACGCgcgccgccGCCCGGa -3' miRNA: 3'- -ACGACGGCgUGa------UGCGacaa----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 118079 | 0.71 | 0.497568 |
Target: 5'- cGCaGCCGCGCUcgucUGCUGgcgGCCCGc -3' miRNA: 3'- aCGaCGGCGUGAu---GCGACaa-CGGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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