Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23653 | 5' | -57.9 | NC_005261.1 | + | 133586 | 0.7 | 0.546482 |
Target: 5'- -cUUGCCGCGCUgGCGCUGcucacgGCCCa- -3' miRNA: 3'- acGACGGCGUGA-UGCGACaa----CGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 21198 | 0.7 | 0.556459 |
Target: 5'- cGCgGCCGCGg-ACGCUGgc-CCCGGc -3' miRNA: 3'- aCGaCGGCGUgaUGCGACaacGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 44961 | 0.7 | 0.566489 |
Target: 5'- cUGCUGCgGgACgcGCGCgaggGCCCGGg -3' miRNA: 3'- -ACGACGgCgUGa-UGCGacaaCGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 98739 | 0.7 | 0.566489 |
Target: 5'- cGCgGCCGCGCggGCGUUGgccGCgCGGu -3' miRNA: 3'- aCGaCGGCGUGa-UGCGACaa-CGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 29882 | 0.7 | 0.576564 |
Target: 5'- cGCUGCCGC-CaGCGCccggGCCCGcGg -3' miRNA: 3'- aCGACGGCGuGaUGCGacaaCGGGC-C- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 99408 | 0.7 | 0.582629 |
Target: 5'- gGCUGCCGCACgagcgugaacgucACGCUGcucCCCGu -3' miRNA: 3'- aCGACGGCGUGa------------UGCGACaacGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 118595 | 0.7 | 0.585666 |
Target: 5'- cGCcGCCGCggaGCUcGCGCUGUcggccguUGCCCuGGc -3' miRNA: 3'- aCGaCGGCG---UGA-UGCGACA-------ACGGG-CC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 126502 | 0.7 | 0.546482 |
Target: 5'- aGCUGCCGCAggcgguCUGC-CUGggcGCCCGc -3' miRNA: 3'- aCGACGGCGU------GAUGcGACaa-CGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 72776 | 0.71 | 0.536562 |
Target: 5'- gGCgGCCGCGC-ACGCguccGggGCCgCGGa -3' miRNA: 3'- aCGaCGGCGUGaUGCGa---CaaCGG-GCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 134498 | 0.71 | 0.526706 |
Target: 5'- cGCUGCUGCACUACGagcacaGCCUGc -3' miRNA: 3'- aCGACGGCGUGAUGCgacaa-CGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 133356 | 0.72 | 0.491826 |
Target: 5'- cGCUGCCGCGCagggcuucggcugccUGCGCgcg-GCCCa- -3' miRNA: 3'- aCGACGGCGUG---------------AUGCGacaaCGGGcc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 55745 | 0.71 | 0.497568 |
Target: 5'- gUGCUGCCGgACggccucgACGCgcgccgccGCCCGGa -3' miRNA: 3'- -ACGACGGCgUGa------UGCGacaa----CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 118079 | 0.71 | 0.497568 |
Target: 5'- cGCaGCCGCGCUcgucUGCUGgcgGCCCGc -3' miRNA: 3'- aCGaCGGCGUGAu---GCGACaa-CGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 71940 | 0.71 | 0.498528 |
Target: 5'- gGCUGCCGCGCgccccacuggcgucgGCGC-GggGCgCGGa -3' miRNA: 3'- aCGACGGCGUGa--------------UGCGaCaaCGgGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 32189 | 0.71 | 0.507203 |
Target: 5'- gGCgGCgCGCGCUGgaGCUGgcGCCCGa -3' miRNA: 3'- aCGaCG-GCGUGAUg-CGACaaCGGGCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 97401 | 0.71 | 0.507203 |
Target: 5'- cGcCUGCCGCggGCUugGCgGgcGCgCCGGg -3' miRNA: 3'- aC-GACGGCG--UGAugCGaCaaCG-GGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 111757 | 0.71 | 0.516918 |
Target: 5'- gGCaGCUcguGCAcCUGCGCUGcgcGCCCGGg -3' miRNA: 3'- aCGaCGG---CGU-GAUGCGACaa-CGGGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 101145 | 0.71 | 0.516918 |
Target: 5'- gGCUGCCGCGCggcgGCGCgcc-GCCgCGa -3' miRNA: 3'- aCGACGGCGUGa---UGCGacaaCGG-GCc -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 22819 | 0.71 | 0.526706 |
Target: 5'- cGCUGCCGC-CgcCGCcGUUGgCgCCGGg -3' miRNA: 3'- aCGACGGCGuGauGCGaCAAC-G-GGCC- -5' |
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23653 | 5' | -57.9 | NC_005261.1 | + | 29930 | 0.71 | 0.526706 |
Target: 5'- aGCUGgCGgaCGCUGCGCUGcgGCCUGc -3' miRNA: 3'- aCGACgGC--GUGAUGCGACaaCGGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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