miRNA: 3'- -GUCCaCGAGCuaCuGGAGC-------ACACCUu -5'
miRNA: 3'- -GUCCacgAGCUaCUGGAgCACACCUU- -5'
miRNA: 3'- -GUCCaCGAGCUACUGGa---GCACACcuu -5'
miRNA: 3'- gUCCaCGA-GCUaCUGgAGCACACCUu -5'
miRNA: 3'- -GUCCACGAGCUACUGGAGCACACCUU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23654 | 3' | -55.2 | NC_005261.1 | + | 95815 | 0.66 | 0.903764 |
|
Target: 5'- gCGGGgGCUCGcgGuCCUCGcggcgcuUGUGGGc -3' miRNA: 3'- -GUCCaCGAGCuaCuGGAGC-------ACACCUu -5' |
|||||||
| 23654 | 3' | -55.2 | NC_005261.1 | + | 111075 | 0.66 | 0.884165 |
|
Target: 5'- uCAGGa--UCGAgGGCCUgGUGUGGGGg -3' miRNA: 3'- -GUCCacgAGCUaCUGGAgCACACCUU- -5' |
|||||||
| 23654 | 3' | -55.2 | NC_005261.1 | + | 19396 | 0.67 | 0.86183 |
|
Target: 5'- gCGGG-GCUCGGUGAUCggccCGUGUGc-- -3' miRNA: 3'- -GUCCaCGAGCUACUGGa---GCACACcuu -5' |
|||||||
| 23654 | 3' | -55.2 | NC_005261.1 | + | 112580 | 0.69 | 0.735283 |
|
Target: 5'- gAGG-GCUgCGAgGGCgUCGUGUGGAc -3' miRNA: 3'- gUCCaCGA-GCUaCUGgAGCACACCUu -5' |
|||||||
| 23654 | 3' | -55.2 | NC_005261.1 | + | 44999 | 1.06 | 0.004361 |
|
Target: 5'- aCAGGUGCUCGAUGACCUCGUGUGGAAc -3' miRNA: 3'- -GUCCACGAGCUACUGGAGCACACCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home