miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23654 5' -53 NC_005261.1 + 31304 0.66 0.9728
Target:  5'- cGCcgCCgc-GCGGGGcCCGCGGGcgCg -3'
miRNA:   3'- -CGaaGGagaCGCUCCaGGCGCUUuaG- -5'
23654 5' -53 NC_005261.1 + 109817 0.66 0.969894
Target:  5'- cGCUUCCgCcGCGGcGG-CCGCcGAAUCu -3'
miRNA:   3'- -CGAAGGaGaCGCU-CCaGGCGcUUUAG- -5'
23654 5' -53 NC_005261.1 + 71315 0.66 0.969894
Target:  5'- aGC-UCCUCcGCGAgcacguagccGG-CCGCGAGcgCg -3'
miRNA:   3'- -CGaAGGAGaCGCU----------CCaGGCGCUUuaG- -5'
23654 5' -53 NC_005261.1 + 47609 0.66 0.969894
Target:  5'- aGCcgCCccCUGCGGGGgcggCCGCGGc--- -3'
miRNA:   3'- -CGaaGGa-GACGCUCCa---GGCGCUuuag -5'
23654 5' -53 NC_005261.1 + 59646 0.66 0.969894
Target:  5'- cGCUgUCCUCgagGCGGGcGaCUGCGGccgGGUCg -3'
miRNA:   3'- -CGA-AGGAGa--CGCUC-CaGGCGCU---UUAG- -5'
23654 5' -53 NC_005261.1 + 68306 0.66 0.968047
Target:  5'- cGCggaCCUCUGCGGccgcuucgacgugccGGUCgGCGAc--- -3'
miRNA:   3'- -CGaa-GGAGACGCU---------------CCAGgCGCUuuag -5'
23654 5' -53 NC_005261.1 + 2333 0.66 0.966772
Target:  5'- cGCgcacgUCCU---CGGGGUCCGCGAu--- -3'
miRNA:   3'- -CGa----AGGAgacGCUCCAGGCGCUuuag -5'
23654 5' -53 NC_005261.1 + 88716 0.66 0.963429
Target:  5'- ---aCCUggcCUGCGGGGUgCGCGAu--- -3'
miRNA:   3'- cgaaGGA---GACGCUCCAgGCGCUuuag -5'
23654 5' -53 NC_005261.1 + 5998 0.66 0.963429
Target:  5'- cGC-UCCUCccgcgGCGAGGgcUCCgGCGAGcGUCc -3'
miRNA:   3'- -CGaAGGAGa----CGCUCC--AGG-CGCUU-UAG- -5'
23654 5' -53 NC_005261.1 + 70745 0.67 0.952009
Target:  5'- cGCcUCCUCgaGC-AGGUCCagGCGGAAUg -3'
miRNA:   3'- -CGaAGGAGa-CGcUCCAGG--CGCUUUAg -5'
23654 5' -53 NC_005261.1 + 85551 0.67 0.938414
Target:  5'- gGC-UCCgUCUGCGGcG-CCGCGAGGUUc -3'
miRNA:   3'- -CGaAGG-AGACGCUcCaGGCGCUUUAG- -5'
23654 5' -53 NC_005261.1 + 24176 0.68 0.928103
Target:  5'- gGCUUCCggggggucgUCgGCGAGGcUCCaggaucgucgGCGggGUCc -3'
miRNA:   3'- -CGAAGG---------AGaCGCUCC-AGG----------CGCuuUAG- -5'
23654 5' -53 NC_005261.1 + 72966 0.68 0.92257
Target:  5'- cGCgcCCgccgCcGCgGGGGUCCGCGAGcgCg -3'
miRNA:   3'- -CGaaGGa---GaCG-CUCCAGGCGCUUuaG- -5'
23654 5' -53 NC_005261.1 + 16978 0.68 0.910748
Target:  5'- uGCgcCCcacCUGCG-GGUCCGCGA--UCa -3'
miRNA:   3'- -CGaaGGa--GACGCuCCAGGCGCUuuAG- -5'
23654 5' -53 NC_005261.1 + 83608 0.69 0.897931
Target:  5'- cGCUcUCCgccgCgGCGuGGUCCagcGCGAGGUCc -3'
miRNA:   3'- -CGA-AGGa---GaCGCuCCAGG---CGCUUUAG- -5'
23654 5' -53 NC_005261.1 + 41706 0.69 0.897931
Target:  5'- cGCgUCCagccCUGC-AGGUUCGCGggGUUg -3'
miRNA:   3'- -CGaAGGa---GACGcUCCAGGCGCuuUAG- -5'
23654 5' -53 NC_005261.1 + 83393 0.7 0.84564
Target:  5'- cGCggCCUCggccgagGCGAgcaGGUgCGCGAAGUUg -3'
miRNA:   3'- -CGaaGGAGa------CGCU---CCAgGCGCUUUAG- -5'
23654 5' -53 NC_005261.1 + 126812 0.71 0.792814
Target:  5'- cGCggCgUCUGCGuacAGGUCUGCGuuGGUCg -3'
miRNA:   3'- -CGaaGgAGACGC---UCCAGGCGCu-UUAG- -5'
23654 5' -53 NC_005261.1 + 109315 0.71 0.792814
Target:  5'- cGCccuggCCUCcGCGAGcGcggCCGCGggGUCg -3'
miRNA:   3'- -CGaa---GGAGaCGCUC-Ca--GGCGCuuUAG- -5'
23654 5' -53 NC_005261.1 + 124847 0.73 0.69363
Target:  5'- --gUCCUC-GCGcAGGUCUGCGgcGUCg -3'
miRNA:   3'- cgaAGGAGaCGC-UCCAGGCGCuuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.