Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23654 | 5' | -53 | NC_005261.1 | + | 2333 | 0.66 | 0.966772 |
Target: 5'- cGCgcacgUCCU---CGGGGUCCGCGAu--- -3' miRNA: 3'- -CGa----AGGAgacGCUCCAGGCGCUuuag -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 5203 | 0.73 | 0.672826 |
Target: 5'- ---cCCUCcggGcCGAGGUCCGCGGAcUCg -3' miRNA: 3'- cgaaGGAGa--C-GCUCCAGGCGCUUuAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 5998 | 0.66 | 0.963429 |
Target: 5'- cGC-UCCUCccgcgGCGAGGgcUCCgGCGAGcGUCc -3' miRNA: 3'- -CGaAGGAGa----CGCUCC--AGG-CGCUU-UAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 16978 | 0.68 | 0.910748 |
Target: 5'- uGCgcCCcacCUGCG-GGUCCGCGA--UCa -3' miRNA: 3'- -CGaaGGa--GACGCuCCAGGCGCUuuAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 24176 | 0.68 | 0.928103 |
Target: 5'- gGCUUCCggggggucgUCgGCGAGGcUCCaggaucgucgGCGggGUCc -3' miRNA: 3'- -CGAAGG---------AGaCGCUCC-AGG----------CGCuuUAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 31304 | 0.66 | 0.9728 |
Target: 5'- cGCcgCCgc-GCGGGGcCCGCGGGcgCg -3' miRNA: 3'- -CGaaGGagaCGCUCCaGGCGCUUuaG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 39243 | 0.73 | 0.672826 |
Target: 5'- gGCgaggUCUCcgGCGAGGUCUccaGCGAGGUCu -3' miRNA: 3'- -CGaa--GGAGa-CGCUCCAGG---CGCUUUAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 41706 | 0.69 | 0.897931 |
Target: 5'- cGCgUCCagccCUGC-AGGUUCGCGggGUUg -3' miRNA: 3'- -CGaAGGa---GACGcUCCAGGCGCuuUAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 45036 | 1.11 | 0.003477 |
Target: 5'- cGCUUCCUCUGCGAGGUCCGCGAAAUCc -3' miRNA: 3'- -CGAAGGAGACGCUCCAGGCGCUUUAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 47609 | 0.66 | 0.969894 |
Target: 5'- aGCcgCCccCUGCGGGGgcggCCGCGGc--- -3' miRNA: 3'- -CGaaGGa-GACGCUCCa---GGCGCUuuag -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 59646 | 0.66 | 0.969894 |
Target: 5'- cGCUgUCCUCgagGCGGGcGaCUGCGGccgGGUCg -3' miRNA: 3'- -CGA-AGGAGa--CGCUC-CaGGCGCU---UUAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 68306 | 0.66 | 0.968047 |
Target: 5'- cGCggaCCUCUGCGGccgcuucgacgugccGGUCgGCGAc--- -3' miRNA: 3'- -CGaa-GGAGACGCU---------------CCAGgCGCUuuag -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 70745 | 0.67 | 0.952009 |
Target: 5'- cGCcUCCUCgaGC-AGGUCCagGCGGAAUg -3' miRNA: 3'- -CGaAGGAGa-CGcUCCAGG--CGCUUUAg -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 71315 | 0.66 | 0.969894 |
Target: 5'- aGC-UCCUCcGCGAgcacguagccGG-CCGCGAGcgCg -3' miRNA: 3'- -CGaAGGAGaCGCU----------CCaGGCGCUUuaG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 72966 | 0.68 | 0.92257 |
Target: 5'- cGCgcCCgccgCcGCgGGGGUCCGCGAGcgCg -3' miRNA: 3'- -CGaaGGa---GaCG-CUCCAGGCGCUUuaG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 83393 | 0.7 | 0.84564 |
Target: 5'- cGCggCCUCggccgagGCGAgcaGGUgCGCGAAGUUg -3' miRNA: 3'- -CGaaGGAGa------CGCU---CCAgGCGCUUUAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 83608 | 0.69 | 0.897931 |
Target: 5'- cGCUcUCCgccgCgGCGuGGUCCagcGCGAGGUCc -3' miRNA: 3'- -CGA-AGGa---GaCGCuCCAGG---CGCUUUAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 85551 | 0.67 | 0.938414 |
Target: 5'- gGC-UCCgUCUGCGGcG-CCGCGAGGUUc -3' miRNA: 3'- -CGaAGG-AGACGCUcCaGGCGCUUUAG- -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 88716 | 0.66 | 0.963429 |
Target: 5'- ---aCCUggcCUGCGGGGUgCGCGAu--- -3' miRNA: 3'- cgaaGGA---GACGCUCCAgGCGCUuuag -5' |
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23654 | 5' | -53 | NC_005261.1 | + | 109315 | 0.71 | 0.792814 |
Target: 5'- cGCccuggCCUCcGCGAGcGcggCCGCGggGUCg -3' miRNA: 3'- -CGaa---GGAGaCGCUC-Ca--GGCGCuuUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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