miRNA display CGI


Results 1 - 20 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 66299 0.66 0.745048
Target:  5'- uGCGUCaG-GCGCgGCACGGccaccgaggcGGCCGUGc -3'
miRNA:   3'- -CGCGG-CaCGCGaCGUGCCu---------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 108419 0.66 0.745048
Target:  5'- cGCGCC-UGCG-UGCACGGcaACCGc- -3'
miRNA:   3'- -CGCGGcACGCgACGUGCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 32245 0.66 0.745048
Target:  5'- uGCGCgGccGCGCUGC-UGGAG-CCGc- -3'
miRNA:   3'- -CGCGgCa-CGCGACGuGCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 107677 0.66 0.744102
Target:  5'- cCGCCGgGCGUUGCcgccgcgGCGGGGgcGCCGc- -3'
miRNA:   3'- cGCGGCaCGCGACG-------UGCCUC--UGGCac -5'
23656 3' -60.1 NC_005261.1 + 45618 0.66 0.735547
Target:  5'- gGCGgCGcgGCGCgGCGCGGcGGGCCc-- -3'
miRNA:   3'- -CGCgGCa-CGCGaCGUGCC-UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 66619 0.66 0.735547
Target:  5'- gGCGCgCGUGCGCaugGC-CGacGAGACCu-- -3'
miRNA:   3'- -CGCG-GCACGCGa--CGuGC--CUCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 86252 0.66 0.735547
Target:  5'- aGCGUCGUGUGCgcGCACGcGuG-CCGg- -3'
miRNA:   3'- -CGCGGCACGCGa-CGUGC-CuCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 49481 0.66 0.735547
Target:  5'- -gGCCGcGCggaaGCUGCAgcagaGGAGGCCGg- -3'
miRNA:   3'- cgCGGCaCG----CGACGUg----CCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 44260 0.66 0.735547
Target:  5'- aCGCCGcgGCGC-GCGgGGGGGCgGg- -3'
miRNA:   3'- cGCGGCa-CGCGaCGUgCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 126382 0.66 0.735547
Target:  5'- uGCGCCuG-GCuCUGCugGGAGugCa-- -3'
miRNA:   3'- -CGCGG-CaCGcGACGugCCUCugGcac -5'
23656 3' -60.1 NC_005261.1 + 48809 0.66 0.735547
Target:  5'- -gGCCGUGCGCgGCGucCGcGAcGCCGUc -3'
miRNA:   3'- cgCGGCACGCGaCGU--GC-CUcUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 2730 0.66 0.735547
Target:  5'- -gGCCGacuUGCGCuUGCgccGCGGcGGGCCGUc -3'
miRNA:   3'- cgCGGC---ACGCG-ACG---UGCC-UCUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 93934 0.66 0.735547
Target:  5'- uGCGCCGUccgcggGCGCcGCcuccggGCGGucGGCCGUc -3'
miRNA:   3'- -CGCGGCA------CGCGaCG------UGCCu-CUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 20246 0.66 0.735547
Target:  5'- cCGCCGcGCGCUcCAUGGGcGCCGa- -3'
miRNA:   3'- cGCGGCaCGCGAcGUGCCUcUGGCac -5'
23656 3' -60.1 NC_005261.1 + 69538 0.66 0.735547
Target:  5'- gGCGCUG-GCGCgcGCGCuGGGGACgGc- -3'
miRNA:   3'- -CGCGGCaCGCGa-CGUG-CCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 53587 0.66 0.734593
Target:  5'- cGgGCCGgcgGCGCcccaGCGGAccgacgaGGCCGUGg -3'
miRNA:   3'- -CgCGGCa--CGCGacg-UGCCU-------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 84603 0.66 0.734593
Target:  5'- cGCGCCGU-UGCUGCcguugaugaucucGCGGAGcGCCu-- -3'
miRNA:   3'- -CGCGGCAcGCGACG-------------UGCCUC-UGGcac -5'
23656 3' -60.1 NC_005261.1 + 43586 0.66 0.731723
Target:  5'- uCGCCGUGCGCgacgccgucuccgGCGaGGAGGgCGa- -3'
miRNA:   3'- cGCGGCACGCGa------------CGUgCCUCUgGCac -5'
23656 3' -60.1 NC_005261.1 + 92235 0.66 0.725962
Target:  5'- cCGCCGaGCGCgcGgAUGGAGGCCa-- -3'
miRNA:   3'- cGCGGCaCGCGa-CgUGCCUCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 37001 0.66 0.725962
Target:  5'- aGC-CCGcGgGCUGCGCGG-GGCCa-- -3'
miRNA:   3'- -CGcGGCaCgCGACGUGCCuCUGGcac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.