miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 31681 0.66 0.706567
Target:  5'- -gGCCGcgGCGCgGCgGCGGcuGAUCGUGa -3'
miRNA:   3'- cgCGGCa-CGCGaCG-UGCCu-CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 89404 0.66 0.706567
Target:  5'- cCGCCGgccuuccucgGCGCgUGCGCGGccGCCGg- -3'
miRNA:   3'- cGCGGCa---------CGCG-ACGUGCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 31877 0.66 0.706567
Target:  5'- gGCGCCuucGCGC-GCGCcGAGGCCGc- -3'
miRNA:   3'- -CGCGGca-CGCGaCGUGcCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 76217 0.66 0.696776
Target:  5'- cGCGCC-UGCGCcGCGCGcuugacGAGACgCGg- -3'
miRNA:   3'- -CGCGGcACGCGaCGUGC------CUCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 64098 0.66 0.696776
Target:  5'- gGCGCCcacaaaGUGCgGCACGGGcGGCaCGUGc -3'
miRNA:   3'- -CGCGGca----CGCGaCGUGCCU-CUG-GCAC- -5'
23656 3' -60.1 NC_005261.1 + 74948 0.66 0.696776
Target:  5'- gGCGCgG-GCGCgcucgGCGCGcucGAGGCCGc- -3'
miRNA:   3'- -CGCGgCaCGCGa----CGUGC---CUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 81372 0.66 0.706567
Target:  5'- gGCGCCG-G-GCUcGCugGGGGcGCCGg- -3'
miRNA:   3'- -CGCGGCaCgCGA-CGugCCUC-UGGCac -5'
23656 3' -60.1 NC_005261.1 + 125366 0.66 0.696776
Target:  5'- cCGCCGggcagagggGCGCUGgaACGG-GugCGUGc -3'
miRNA:   3'- cGCGGCa--------CGCGACg-UGCCuCugGCAC- -5'
23656 3' -60.1 NC_005261.1 + 104730 0.66 0.706567
Target:  5'- cGCGUCGUGcCGCgUGCGCGc--GCCGUu -3'
miRNA:   3'- -CGCGGCAC-GCG-ACGUGCcucUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 112680 0.66 0.696776
Target:  5'- aGCGCgagGgGCUGgGCGucGAGGCCGUGc -3'
miRNA:   3'- -CGCGgcaCgCGACgUGC--CUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 1197 0.66 0.696776
Target:  5'- gGgGCCGgGCGCgGCGCGGAccccccGCCGa- -3'
miRNA:   3'- -CgCGGCaCGCGaCGUGCCUc-----UGGCac -5'
23656 3' -60.1 NC_005261.1 + 23339 0.66 0.696776
Target:  5'- aGCGCgCG-GCGCaGCGCGcGcgugucGGCCGUGa -3'
miRNA:   3'- -CGCG-GCaCGCGaCGUGC-Cu-----CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 134994 0.66 0.706567
Target:  5'- cCGCCGggGCGCcccugGCGCGGcGGGCCc-- -3'
miRNA:   3'- cGCGGCa-CGCGa----CGUGCC-UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 91434 0.66 0.696776
Target:  5'- cCGCCGcggugaacGCGCUGCGCGGcacGGCCc-- -3'
miRNA:   3'- cGCGGCa-------CGCGACGUGCCu--CUGGcac -5'
23656 3' -60.1 NC_005261.1 + 85789 0.66 0.706567
Target:  5'- aCGCCGU-CGCUGgGCaGAcGGCCGUc -3'
miRNA:   3'- cGCGGCAcGCGACgUGcCU-CUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 127305 0.66 0.705591
Target:  5'- cCGCCGgcugGCGgUGgggcccugccgccCGCGGGGGCCGg- -3'
miRNA:   3'- cGCGGCa---CGCgAC-------------GUGCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 66299 0.66 0.745048
Target:  5'- uGCGUCaG-GCGCgGCACGGccaccgaggcGGCCGUGc -3'
miRNA:   3'- -CGCGG-CaCGCGaCGUGCCu---------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 1737 0.66 0.706567
Target:  5'- cCGCgGUGCGCgggcccagGCGCGuGGccACCGUGu -3'
miRNA:   3'- cGCGgCACGCGa-------CGUGCcUC--UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 29240 0.66 0.706567
Target:  5'- aCGCCGcgGCGCcGCGCGacGGGCCGc- -3'
miRNA:   3'- cGCGGCa-CGCGaCGUGCc-UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 3342 0.66 0.706567
Target:  5'- cGCGCCGcgGCGCccgGCGCGccGGCCu-- -3'
miRNA:   3'- -CGCGGCa-CGCGa--CGUGCcuCUGGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.