miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 89404 0.66 0.706567
Target:  5'- cCGCCGgccuuccucgGCGCgUGCGCGGccGCCGg- -3'
miRNA:   3'- cGCGGCa---------CGCG-ACGUGCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 3342 0.66 0.706567
Target:  5'- cGCGCCGcgGCGCccgGCGCGccGGCCu-- -3'
miRNA:   3'- -CGCGGCa-CGCGa--CGUGCcuCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 93934 0.66 0.735547
Target:  5'- uGCGCCGUccgcggGCGCcGCcuccggGCGGucGGCCGUc -3'
miRNA:   3'- -CGCGGCA------CGCGaCG------UGCCu-CUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 37001 0.66 0.725962
Target:  5'- aGC-CCGcGgGCUGCGCGG-GGCCa-- -3'
miRNA:   3'- -CGcGGCaCgCGACGUGCCuCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 49481 0.66 0.735547
Target:  5'- -gGCCGcGCggaaGCUGCAgcagaGGAGGCCGg- -3'
miRNA:   3'- cgCGGCaCG----CGACGUg----CCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 126382 0.66 0.735547
Target:  5'- uGCGCCuG-GCuCUGCugGGAGugCa-- -3'
miRNA:   3'- -CGCGG-CaCGcGACGugCCUCugGcac -5'
23656 3' -60.1 NC_005261.1 + 63731 0.66 0.725962
Target:  5'- aGCGgCGUGCGCaugGCcgcgGCGGcguAGGCCGc- -3'
miRNA:   3'- -CGCgGCACGCGa--CG----UGCC---UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 73648 0.66 0.716299
Target:  5'- cGCGCCGUccagguagacGCGCacGaCGCGGAGGgCGg- -3'
miRNA:   3'- -CGCGGCA----------CGCGa-C-GUGCCUCUgGCac -5'
23656 3' -60.1 NC_005261.1 + 97646 0.67 0.686933
Target:  5'- gGCGCgG-GUGCcGCACcugGGGGGCCGg- -3'
miRNA:   3'- -CGCGgCaCGCGaCGUG---CCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 121169 0.67 0.686933
Target:  5'- uGC-CCGgGCGCucggUGCACGG-GGCCGg- -3'
miRNA:   3'- -CGcGGCaCGCG----ACGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 137743 0.67 0.667126
Target:  5'- gGgGCCGaaaucgGCGC-GCGCGGGGGCgGg- -3'
miRNA:   3'- -CgCGGCa-----CGCGaCGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 93412 0.67 0.671098
Target:  5'- cCGUCGUGCGCccgcgccccgcgaugUGCuuGaGGGCCGUGg -3'
miRNA:   3'- cGCGGCACGCG---------------ACGugCcUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 76128 0.67 0.637233
Target:  5'- cGCGCCG-GCGCccGuCGUGGAGGUCGUGg -3'
miRNA:   3'- -CGCGGCaCGCGa-C-GUGCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 68148 0.67 0.637233
Target:  5'- cGCGCCGUGgccggcuacaCGC-GCGCGGAGcucgcgcgcGCCGc- -3'
miRNA:   3'- -CGCGGCAC----------GCGaCGUGCCUC---------UGGCac -5'
23656 3' -60.1 NC_005261.1 + 54152 0.67 0.637233
Target:  5'- cGCgGCCGUGCGCgggguUGC-CGGgaAGACCa-- -3'
miRNA:   3'- -CG-CGGCACGCG-----ACGuGCC--UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 46678 0.67 0.637233
Target:  5'- -gGCCGcGCGCUcCACGGcGGCCGc- -3'
miRNA:   3'- cgCGGCaCGCGAcGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 135642 0.67 0.637233
Target:  5'- uGCGCUGcuaccUGCGCggGCGCGGGcGGCCc-- -3'
miRNA:   3'- -CGCGGC-----ACGCGa-CGUGCCU-CUGGcac -5'
23656 3' -60.1 NC_005261.1 + 73392 0.67 0.667126
Target:  5'- cGCGCgCGUGCaGCaccagGUACGG-GGCCGc- -3'
miRNA:   3'- -CGCG-GCACG-CGa----CGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 60 0.67 0.667126
Target:  5'- gGgGCCGaaaucgGCGC-GCGCGGGGGCgGg- -3'
miRNA:   3'- -CgCGGCa-----CGCGaCGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 90547 0.67 0.686933
Target:  5'- cCGCCGccGCGCccga-GGAGGCCGUGc -3'
miRNA:   3'- cGCGGCa-CGCGacgugCCUCUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.