miRNA display CGI


Results 61 - 80 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 115206 0.67 0.637233
Target:  5'- aGCGcCCGUGCGUc-CGCGGcgcGAUCGUGu -3'
miRNA:   3'- -CGC-GGCACGCGacGUGCCu--CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 46678 0.67 0.637233
Target:  5'- -gGCCGcGCGCUcCACGGcGGCCGc- -3'
miRNA:   3'- cgCGGCaCGCGAcGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 53297 0.67 0.637233
Target:  5'- aGCGCCcccGUGCGCggGuCGaucaGGAGGCCGc- -3'
miRNA:   3'- -CGCGG---CACGCGa-C-GUg---CCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 133591 0.67 0.656182
Target:  5'- cGCGCUG-GCGCUGCucACGGcccaccucgcgcuGGcGCUGUGg -3'
miRNA:   3'- -CGCGGCaCGCGACG--UGCC-------------UC-UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 137743 0.67 0.667126
Target:  5'- gGgGCCGaaaucgGCGC-GCGCGGGGGCgGg- -3'
miRNA:   3'- -CgCGGCa-----CGCGaCGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 90547 0.67 0.686933
Target:  5'- cCGCCGccGCGCccga-GGAGGCCGUGc -3'
miRNA:   3'- cGCGGCa-CGCGacgugCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 134522 0.67 0.686933
Target:  5'- uGCGCC-UGCaGCUGCugGGcgcgcAGAC-GUGa -3'
miRNA:   3'- -CGCGGcACG-CGACGugCC-----UCUGgCAC- -5'
23656 3' -60.1 NC_005261.1 + 97646 0.67 0.686933
Target:  5'- gGCGCgG-GUGCcGCACcugGGGGGCCGg- -3'
miRNA:   3'- -CGCGgCaCGCGaCGUG---CCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 74702 0.67 0.686933
Target:  5'- -gGCCGccGCGCggGCGCGGAaccgGGCCGc- -3'
miRNA:   3'- cgCGGCa-CGCGa-CGUGCCU----CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 22089 0.67 0.678038
Target:  5'- gGCGCCGcgugggggcgggaggGCGgUGUGCGGAgaGugCGUGc -3'
miRNA:   3'- -CGCGGCa--------------CGCgACGUGCCU--CugGCAC- -5'
23656 3' -60.1 NC_005261.1 + 70872 0.67 0.677047
Target:  5'- cCGCCGUgGCGUgGCcgGCGGugcacauGGCCGUGc -3'
miRNA:   3'- cGCGGCA-CGCGaCG--UGCCu------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 82161 0.67 0.677047
Target:  5'- cGCGCCagcaaGCGCgGCGCGGaAGGCgCGg- -3'
miRNA:   3'- -CGCGGca---CGCGaCGUGCC-UCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 39895 0.67 0.677047
Target:  5'- cGCgGCUGUGCaGCUgGCGCGcGcGGCCGUc -3'
miRNA:   3'- -CG-CGGCACG-CGA-CGUGC-CuCUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 37185 0.67 0.677047
Target:  5'- gGCGCUGcuggcgGCGCUGCugGCGGcGcuACUGUGg -3'
miRNA:   3'- -CGCGGCa-----CGCGACG--UGCCuC--UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 93412 0.67 0.671098
Target:  5'- cCGUCGUGCGCccgcgccccgcgaugUGCuuGaGGGCCGUGg -3'
miRNA:   3'- cGCGGCACGCG---------------ACGugCcUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 60 0.67 0.667126
Target:  5'- gGgGCCGaaaucgGCGC-GCGCGGGGGCgGg- -3'
miRNA:   3'- -CgCGGCa-----CGCGaCGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 73392 0.67 0.667126
Target:  5'- cGCGCgCGUGCaGCaccagGUACGG-GGCCGc- -3'
miRNA:   3'- -CGCG-GCACG-CGa----CGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 63367 0.67 0.666133
Target:  5'- gGCGCgGUGCGggugUGC-CGGGucgcccuGGCCGUGg -3'
miRNA:   3'- -CGCGgCACGCg---ACGuGCCU-------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 3855 0.67 0.657178
Target:  5'- gGCGCCG-GCGCcGCGCGG---CCGg- -3'
miRNA:   3'- -CGCGGCaCGCGaCGUGCCucuGGCac -5'
23656 3' -60.1 NC_005261.1 + 82378 0.67 0.656182
Target:  5'- cGCGCCGccaGCGCcGCccagcccGCGG-GGCCGUc -3'
miRNA:   3'- -CGCGGCa--CGCGaCG-------UGCCuCUGGCAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.