miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 80668 0.71 0.436468
Target:  5'- uCGCgGUGCGCgccGuCGCGGAGcCCGUa -3'
miRNA:   3'- cGCGgCACGCGa--C-GUGCCUCuGGCAc -5'
23656 3' -60.1 NC_005261.1 + 55034 0.71 0.445289
Target:  5'- cCGCCGgccccgcGCaGCUGCGCGG-GGCCGg- -3'
miRNA:   3'- cGCGGCa------CG-CGACGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 58784 0.71 0.445289
Target:  5'- cGCGCCGgccaGCGC-GCGCaGGAaGGCCGg- -3'
miRNA:   3'- -CGCGGCa---CGCGaCGUG-CCU-CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 76470 0.71 0.445289
Target:  5'- gGCGCCG-GCGCgcGCGCGGAccCCGa- -3'
miRNA:   3'- -CGCGGCaCGCGa-CGUGCCUcuGGCac -5'
23656 3' -60.1 NC_005261.1 + 132081 0.71 0.454208
Target:  5'- cCGCCGUcGcCGCUGcCGCGGAGGgCGg- -3'
miRNA:   3'- cGCGGCA-C-GCGAC-GUGCCUCUgGCac -5'
23656 3' -60.1 NC_005261.1 + 36780 0.71 0.454208
Target:  5'- gGC-CCGUGCGUUGCGCcGAGACUuUGc -3'
miRNA:   3'- -CGcGGCACGCGACGUGcCUCUGGcAC- -5'
23656 3' -60.1 NC_005261.1 + 40226 0.71 0.454208
Target:  5'- aGCGUCGU-CGUcucugGCcCGGGGGCCGUGa -3'
miRNA:   3'- -CGCGGCAcGCGa----CGuGCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 75472 0.7 0.458704
Target:  5'- gGCGCCGggcggcgGCGCgggccgcuacgaGCGCGGGGcgcuggaggcgcacGCCGUGg -3'
miRNA:   3'- -CGCGGCa------CGCGa-----------CGUGCCUC--------------UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 53108 0.7 0.463223
Target:  5'- aGCGCCGcgGCGCUGCGCGcc-GCCa-- -3'
miRNA:   3'- -CGCGGCa-CGCGACGUGCcucUGGcac -5'
23656 3' -60.1 NC_005261.1 + 77664 0.7 0.463223
Target:  5'- gGCGCCugcagGCGCaggGCGCGGAcgGGCCGg- -3'
miRNA:   3'- -CGCGGca---CGCGa--CGUGCCU--CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 68757 0.7 0.463223
Target:  5'- cCGCCGggGCGC--CGCGGAGccGCCGUGu -3'
miRNA:   3'- cGCGGCa-CGCGacGUGCCUC--UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 63551 0.7 0.472332
Target:  5'- cGCGCCGUGCccGCUgGCGCGGccggcaugauGGGCCc-- -3'
miRNA:   3'- -CGCGGCACG--CGA-CGUGCC----------UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 102938 0.7 0.481529
Target:  5'- aGCGCCGccGcCGCUGCGgCGGcGGCCGc- -3'
miRNA:   3'- -CGCGGCa-C-GCGACGU-GCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 118923 0.7 0.490813
Target:  5'- gGCGCCGcgggcgcgGCGCcGCGCGGcuGGCCGc- -3'
miRNA:   3'- -CGCGGCa-------CGCGaCGUGCCu-CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 76166 0.7 0.499239
Target:  5'- aCGCCGUgGCGCUGCaguacgaGCGGGGcCUGg- -3'
miRNA:   3'- cGCGGCA-CGCGACG-------UGCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 86935 0.7 0.500179
Target:  5'- cCGCCGcGCGCggcggGCugGucaaAGACCGUGa -3'
miRNA:   3'- cGCGGCaCGCGa----CGugCc---UCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 73726 0.7 0.500179
Target:  5'- uCGgCGUGCGCgcuugcGCGCGGGGGuCCGg- -3'
miRNA:   3'- cGCgGCACGCGa-----CGUGCCUCU-GGCac -5'
23656 3' -60.1 NC_005261.1 + 47453 0.7 0.500179
Target:  5'- gGCGcCCGgccCGCuUGCGCGGGGGCUGg- -3'
miRNA:   3'- -CGC-GGCac-GCG-ACGUGCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 59416 0.7 0.500179
Target:  5'- gGCGCCG-GCGCUGuCGCGcGGcCCGg- -3'
miRNA:   3'- -CGCGGCaCGCGAC-GUGCcUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 76912 0.7 0.500179
Target:  5'- cGCGCUGUGCG-UGCugGGccGCCGc- -3'
miRNA:   3'- -CGCGGCACGCgACGugCCucUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.