miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 71959 0.7 0.500179
Target:  5'- gGCGUCG-GCGCgggGCGCGGAGcGCgCGg- -3'
miRNA:   3'- -CGCGGCaCGCGa--CGUGCCUC-UG-GCac -5'
23656 3' -60.1 NC_005261.1 + 121066 0.7 0.509623
Target:  5'- cGCGCgGUGUGCgcgGCGCcGGcGGCCGc- -3'
miRNA:   3'- -CGCGgCACGCGa--CGUG-CCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 54053 0.69 0.528729
Target:  5'- cGCGCgGUGCGCUucgguaGUGCGGucgaAGGCCGc- -3'
miRNA:   3'- -CGCGgCACGCGA------CGUGCC----UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 29848 0.69 0.528729
Target:  5'- cGCGCCGUGCucgccgGCcGCGCGGc-GCCGg- -3'
miRNA:   3'- -CGCGGCACG------CGaCGUGCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 106912 0.69 0.528729
Target:  5'- cGCGCCGcggcGCGCUGCAgGGccGCCa-- -3'
miRNA:   3'- -CGCGGCa---CGCGACGUgCCucUGGcac -5'
23656 3' -60.1 NC_005261.1 + 100729 0.69 0.538381
Target:  5'- cGCGCCGcGCGCgcGCGCGGcGGCgCGc- -3'
miRNA:   3'- -CGCGGCaCGCGa-CGUGCCuCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 80047 0.69 0.538381
Target:  5'- cCGCCGUcgccacugGCgGCggGCGCGGGGGgCGUGg -3'
miRNA:   3'- cGCGGCA--------CG-CGa-CGUGCCUCUgGCAC- -5'
23656 3' -60.1 NC_005261.1 + 52970 0.69 0.538381
Target:  5'- cGCGCCGgugcgGCGCcgGCagGCGGGGGCgGc- -3'
miRNA:   3'- -CGCGGCa----CGCGa-CG--UGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 30374 0.69 0.538381
Target:  5'- cGCGCCGgGCGCcgcgGCGCGGGuGGagGUGg -3'
miRNA:   3'- -CGCGGCaCGCGa---CGUGCCU-CUggCAC- -5'
23656 3' -60.1 NC_005261.1 + 30165 0.69 0.538381
Target:  5'- gGCGCCGcgcccgccGCGCUGCGCGccGAGGCgGc- -3'
miRNA:   3'- -CGCGGCa-------CGCGACGUGC--CUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 115361 0.69 0.538381
Target:  5'- aCGCUGUGCGCcucCACGGuuGCCGg- -3'
miRNA:   3'- cGCGGCACGCGac-GUGCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 47674 0.69 0.538381
Target:  5'- aGCGCCGaGCGCaGCACGGccGCCc-- -3'
miRNA:   3'- -CGCGGCaCGCGaCGUGCCucUGGcac -5'
23656 3' -60.1 NC_005261.1 + 33028 0.69 0.538381
Target:  5'- gGCGCCGaUGCGgaGCguccGCGGAGgGCCa-- -3'
miRNA:   3'- -CGCGGC-ACGCgaCG----UGCCUC-UGGcac -5'
23656 3' -60.1 NC_005261.1 + 121106 0.69 0.546146
Target:  5'- -gGCCGUGCGgguccucuaggGCGCGGAGGCgCGg- -3'
miRNA:   3'- cgCGGCACGCga---------CGUGCCUCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 68670 0.69 0.548093
Target:  5'- cGCGCCGccgGCGUccgccGCGUGGGGGCCGg- -3'
miRNA:   3'- -CGCGGCa--CGCGa----CGUGCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 90740 0.69 0.548093
Target:  5'- cGCGCCugagGCGCUgGCGCGGgacuuccccgAGGCCGc- -3'
miRNA:   3'- -CGCGGca--CGCGA-CGUGCC----------UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 133819 0.69 0.548093
Target:  5'- gGCGaCGagGCGCUGCGCGGccgcgugcgcGCCGUGg -3'
miRNA:   3'- -CGCgGCa-CGCGACGUGCCuc--------UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 52341 0.69 0.548093
Target:  5'- gGCGCCcgccGCGCUGCcgcCGGAG-CCGg- -3'
miRNA:   3'- -CGCGGca--CGCGACGu--GCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 58264 0.69 0.557859
Target:  5'- cGCGCCGcgcucgccGCGCU-CACGG-GGCCGg- -3'
miRNA:   3'- -CGCGGCa-------CGCGAcGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 70641 0.69 0.557859
Target:  5'- aGCGCCGcgGCGCUGagguucggcgcCGCGGccgcGGGCCGc- -3'
miRNA:   3'- -CGCGGCa-CGCGAC-----------GUGCC----UCUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.