miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 58264 0.69 0.557859
Target:  5'- cGCGCCGcgcucgccGCGCU-CACGG-GGCCGg- -3'
miRNA:   3'- -CGCGGCa-------CGCGAcGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 44872 0.69 0.557859
Target:  5'- aGCGCCGccgcgaGCGCcGCGgGGAuGGCCGg- -3'
miRNA:   3'- -CGCGGCa-----CGCGaCGUgCCU-CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 31778 0.69 0.567674
Target:  5'- cGCGCCGcgGUGCUGCccGCGGcgcAGugCGc- -3'
miRNA:   3'- -CGCGGCa-CGCGACG--UGCC---UCugGCac -5'
23656 3' -60.1 NC_005261.1 + 68269 0.68 0.577533
Target:  5'- cGCGCC-UGCGCccGCGCGGcgGGGCCc-- -3'
miRNA:   3'- -CGCGGcACGCGa-CGUGCC--UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 13654 0.68 0.583466
Target:  5'- cGCGCCGUGcCGCcgccgcgggggggGCGCGGGGcgcgcgGgCGUGg -3'
miRNA:   3'- -CGCGGCAC-GCGa------------CGUGCCUC------UgGCAC- -5'
23656 3' -60.1 NC_005261.1 + 113545 0.68 0.587428
Target:  5'- gGgGCCGUGCGC-GCGCuG-GACCGc- -3'
miRNA:   3'- -CgCGGCACGCGaCGUGcCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 109230 0.68 0.587428
Target:  5'- aCGCCGcGCGCUGCagcGCGGcccAGugCGg- -3'
miRNA:   3'- cGCGGCaCGCGACG---UGCC---UCugGCac -5'
23656 3' -60.1 NC_005261.1 + 105285 0.68 0.587428
Target:  5'- aGCGCCGgcgagcccggGCGCgcgaGCGCGGGGuCCu-- -3'
miRNA:   3'- -CGCGGCa---------CGCGa---CGUGCCUCuGGcac -5'
23656 3' -60.1 NC_005261.1 + 43463 0.68 0.587428
Target:  5'- uCGCCGggcggGUGCUG-GCGGAGugCGa- -3'
miRNA:   3'- cGCGGCa----CGCGACgUGCCUCugGCac -5'
23656 3' -60.1 NC_005261.1 + 51386 0.68 0.597354
Target:  5'- -gGCCGUGCGCgaacuccGCgaGCGGAGcCCGc- -3'
miRNA:   3'- cgCGGCACGCGa------CG--UGCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 1169 0.68 0.597354
Target:  5'- cGCGCCGgcccGCGCcGCGgcCGG-GGCCGg- -3'
miRNA:   3'- -CGCGGCa---CGCGaCGU--GCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 64831 0.68 0.597354
Target:  5'- cGCGCCGgguccgcGCGCUGCAgCGccauGACCGc- -3'
miRNA:   3'- -CGCGGCa------CGCGACGU-GCcu--CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 34367 0.68 0.597354
Target:  5'- gGCGCCGcgcgGCGCcGCGCGcAGACgCGg- -3'
miRNA:   3'- -CGCGGCa---CGCGaCGUGCcUCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 126951 0.68 0.6083
Target:  5'- gGCGCCGggcgcgggggcggcaGCGCgaaccGCGCGGgggacGGACCGUc -3'
miRNA:   3'- -CGCGGCa--------------CGCGa----CGUGCC-----UCUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 109918 0.68 0.617272
Target:  5'- cCGCCGggaUGCUGCACGuGuccgacgcGACCGUGa -3'
miRNA:   3'- cGCGGCac-GCGACGUGC-Cu-------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 70340 0.68 0.617272
Target:  5'- cGCGUCGaGCGg-GC-CGGGGACCGg- -3'
miRNA:   3'- -CGCGGCaCGCgaCGuGCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 92752 0.68 0.627251
Target:  5'- aGCGCCGcccGCGCcGCuCGGAccgGGCCGa- -3'
miRNA:   3'- -CGCGGCa--CGCGaCGuGCCU---CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 90078 0.68 0.627251
Target:  5'- gGCGCCGaGgGCaGCgACGGGGGcCCGUu -3'
miRNA:   3'- -CGCGGCaCgCGaCG-UGCCUCU-GGCAc -5'
23656 3' -60.1 NC_005261.1 + 68083 0.68 0.627251
Target:  5'- uCGCCc-GCGgggGCGgGGAGGCCGUGa -3'
miRNA:   3'- cGCGGcaCGCga-CGUgCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 53297 0.67 0.637233
Target:  5'- aGCGCCcccGUGCGCggGuCGaucaGGAGGCCGc- -3'
miRNA:   3'- -CGCGG---CACGCGa-C-GUg---CCUCUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.