Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23656 | 3' | -60.1 | NC_005261.1 | + | 70474 | 0.66 | 0.725962 |
Target: 5'- cGCGCCGcgggUGCGC-GCGCGuGAG-CaCGUa -3' miRNA: 3'- -CGCGGC----ACGCGaCGUGC-CUCuG-GCAc -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 132632 | 0.66 | 0.725962 |
Target: 5'- gGCGCCGagGaCGCggGCGCGGcGGCCc-- -3' miRNA: 3'- -CGCGGCa-C-GCGa-CGUGCCuCUGGcac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 104163 | 0.66 | 0.725962 |
Target: 5'- cGCGCCGUccgcggGCGCcGCGCGcGGG-UCGUc -3' miRNA: 3'- -CGCGGCA------CGCGaCGUGC-CUCuGGCAc -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 63731 | 0.66 | 0.725962 |
Target: 5'- aGCGgCGUGCGCaugGCcgcgGCGGcguAGGCCGc- -3' miRNA: 3'- -CGCgGCACGCGa--CG----UGCC---UCUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 73648 | 0.66 | 0.716299 |
Target: 5'- cGCGCCGUccagguagacGCGCacGaCGCGGAGGgCGg- -3' miRNA: 3'- -CGCGGCA----------CGCGa-C-GUGCCUCUgGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 121787 | 0.66 | 0.716299 |
Target: 5'- cGCgGCCGgcGgGCUGgGCaGGGGGCgCGUGg -3' miRNA: 3'- -CG-CGGCa-CgCGACgUG-CCUCUG-GCAC- -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 104359 | 0.66 | 0.710467 |
Target: 5'- aGCGCCGccCGCgagaacagccgccgGC-CGGAGGCCGa- -3' miRNA: 3'- -CGCGGCacGCGa-------------CGuGCCUCUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 48318 | 0.66 | 0.707543 |
Target: 5'- cGCGUCGggcccgggcucggggGCGC-GCGCGGcgAGGCCGa- -3' miRNA: 3'- -CGCGGCa--------------CGCGaCGUGCC--UCUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 85789 | 0.66 | 0.706567 |
Target: 5'- aCGCCGU-CGCUGgGCaGAcGGCCGUc -3' miRNA: 3'- cGCGGCAcGCGACgUGcCU-CUGGCAc -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 3342 | 0.66 | 0.706567 |
Target: 5'- cGCGCCGcgGCGCccgGCGCGccGGCCu-- -3' miRNA: 3'- -CGCGGCa-CGCGa--CGUGCcuCUGGcac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 31681 | 0.66 | 0.706567 |
Target: 5'- -gGCCGcgGCGCgGCgGCGGcuGAUCGUGa -3' miRNA: 3'- cgCGGCa-CGCGaCG-UGCCu-CUGGCAC- -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 31877 | 0.66 | 0.706567 |
Target: 5'- gGCGCCuucGCGC-GCGCcGAGGCCGc- -3' miRNA: 3'- -CGCGGca-CGCGaCGUGcCUCUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 134994 | 0.66 | 0.706567 |
Target: 5'- cCGCCGggGCGCcccugGCGCGGcGGGCCc-- -3' miRNA: 3'- cGCGGCa-CGCGa----CGUGCC-UCUGGcac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 81372 | 0.66 | 0.706567 |
Target: 5'- gGCGCCG-G-GCUcGCugGGGGcGCCGg- -3' miRNA: 3'- -CGCGGCaCgCGA-CGugCCUC-UGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 104730 | 0.66 | 0.706567 |
Target: 5'- cGCGUCGUGcCGCgUGCGCGc--GCCGUu -3' miRNA: 3'- -CGCGGCAC-GCG-ACGUGCcucUGGCAc -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 1737 | 0.66 | 0.706567 |
Target: 5'- cCGCgGUGCGCgggcccagGCGCGuGGccACCGUGu -3' miRNA: 3'- cGCGgCACGCGa-------CGUGCcUC--UGGCAC- -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 29240 | 0.66 | 0.706567 |
Target: 5'- aCGCCGcgGCGCcGCGCGacGGGCCGc- -3' miRNA: 3'- cGCGGCa-CGCGaCGUGCc-UCUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 89404 | 0.66 | 0.706567 |
Target: 5'- cCGCCGgccuuccucgGCGCgUGCGCGGccGCCGg- -3' miRNA: 3'- cGCGGCa---------CGCG-ACGUGCCucUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 127305 | 0.66 | 0.705591 |
Target: 5'- cCGCCGgcugGCGgUGgggcccugccgccCGCGGGGGCCGg- -3' miRNA: 3'- cGCGGCa---CGCgAC-------------GUGCCUCUGGCac -5' |
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23656 | 3' | -60.1 | NC_005261.1 | + | 125366 | 0.66 | 0.696776 |
Target: 5'- cCGCCGggcagagggGCGCUGgaACGG-GugCGUGc -3' miRNA: 3'- cGCGGCa--------CGCGACg-UGCCuCugGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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