miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 23339 0.66 0.696776
Target:  5'- aGCGCgCG-GCGCaGCGCGcGcgugucGGCCGUGa -3'
miRNA:   3'- -CGCG-GCaCGCGaCGUGC-Cu-----CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 64098 0.66 0.696776
Target:  5'- gGCGCCcacaaaGUGCgGCACGGGcGGCaCGUGc -3'
miRNA:   3'- -CGCGGca----CGCGaCGUGCCU-CUG-GCAC- -5'
23656 3' -60.1 NC_005261.1 + 76217 0.66 0.696776
Target:  5'- cGCGCC-UGCGCcGCGCGcuugacGAGACgCGg- -3'
miRNA:   3'- -CGCGGcACGCGaCGUGC------CUCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 112680 0.66 0.696776
Target:  5'- aGCGCgagGgGCUGgGCGucGAGGCCGUGc -3'
miRNA:   3'- -CGCGgcaCgCGACgUGC--CUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 74948 0.66 0.696776
Target:  5'- gGCGCgG-GCGCgcucgGCGCGcucGAGGCCGc- -3'
miRNA:   3'- -CGCGgCaCGCGa----CGUGC---CUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 91434 0.66 0.696776
Target:  5'- cCGCCGcggugaacGCGCUGCGCGGcacGGCCc-- -3'
miRNA:   3'- cGCGGCa-------CGCGACGUGCCu--CUGGcac -5'
23656 3' -60.1 NC_005261.1 + 125366 0.66 0.696776
Target:  5'- cCGCCGggcagagggGCGCUGgaACGG-GugCGUGc -3'
miRNA:   3'- cGCGGCa--------CGCGACg-UGCCuCugGCAC- -5'
23656 3' -60.1 NC_005261.1 + 104266 0.66 0.695794
Target:  5'- aGCGCCGcggucucgGCgGCUGCGCGGgccucgcAGGCCc-- -3'
miRNA:   3'- -CGCGGCa-------CG-CGACGUGCC-------UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 121169 0.67 0.686933
Target:  5'- uGC-CCGgGCGCucggUGCACGG-GGCCGg- -3'
miRNA:   3'- -CGcGGCaCGCG----ACGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 97646 0.67 0.686933
Target:  5'- gGCGCgG-GUGCcGCACcugGGGGGCCGg- -3'
miRNA:   3'- -CGCGgCaCGCGaCGUG---CCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 90547 0.67 0.686933
Target:  5'- cCGCCGccGCGCccga-GGAGGCCGUGc -3'
miRNA:   3'- cGCGGCa-CGCGacgugCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 134522 0.67 0.686933
Target:  5'- uGCGCC-UGCaGCUGCugGGcgcgcAGAC-GUGa -3'
miRNA:   3'- -CGCGGcACG-CGACGugCC-----UCUGgCAC- -5'
23656 3' -60.1 NC_005261.1 + 74702 0.67 0.686933
Target:  5'- -gGCCGccGCGCggGCGCGGAaccgGGCCGc- -3'
miRNA:   3'- cgCGGCa-CGCGa-CGUGCCU----CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 22089 0.67 0.678038
Target:  5'- gGCGCCGcgugggggcgggaggGCGgUGUGCGGAgaGugCGUGc -3'
miRNA:   3'- -CGCGGCa--------------CGCgACGUGCCU--CugGCAC- -5'
23656 3' -60.1 NC_005261.1 + 82161 0.67 0.677047
Target:  5'- cGCGCCagcaaGCGCgGCGCGGaAGGCgCGg- -3'
miRNA:   3'- -CGCGGca---CGCGaCGUGCC-UCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 70872 0.67 0.677047
Target:  5'- cCGCCGUgGCGUgGCcgGCGGugcacauGGCCGUGc -3'
miRNA:   3'- cGCGGCA-CGCGaCG--UGCCu------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 37185 0.67 0.677047
Target:  5'- gGCGCUGcuggcgGCGCUGCugGCGGcGcuACUGUGg -3'
miRNA:   3'- -CGCGGCa-----CGCGACG--UGCCuC--UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 39895 0.67 0.677047
Target:  5'- cGCgGCUGUGCaGCUgGCGCGcGcGGCCGUc -3'
miRNA:   3'- -CG-CGGCACG-CGA-CGUGC-CuCUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 93412 0.67 0.671098
Target:  5'- cCGUCGUGCGCccgcgccccgcgaugUGCuuGaGGGCCGUGg -3'
miRNA:   3'- cGCGGCACGCG---------------ACGugCcUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 60 0.67 0.667126
Target:  5'- gGgGCCGaaaucgGCGC-GCGCGGGGGCgGg- -3'
miRNA:   3'- -CgCGGCa-----CGCGaCGUGCCUCUGgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.