miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 60 0.67 0.667126
Target:  5'- gGgGCCGaaaucgGCGC-GCGCGGGGGCgGg- -3'
miRNA:   3'- -CgCGGCa-----CGCGaCGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 137743 0.67 0.667126
Target:  5'- gGgGCCGaaaucgGCGC-GCGCGGGGGCgGg- -3'
miRNA:   3'- -CgCGGCa-----CGCGaCGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 63367 0.67 0.666133
Target:  5'- gGCGCgGUGCGggugUGC-CGGGucgcccuGGCCGUGg -3'
miRNA:   3'- -CGCGgCACGCg---ACGuGCCU-------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 3855 0.67 0.657178
Target:  5'- gGCGCCG-GCGCcGCGCGG---CCGg- -3'
miRNA:   3'- -CGCGGCaCGCGaCGUGCCucuGGCac -5'
23656 3' -60.1 NC_005261.1 + 82378 0.67 0.656182
Target:  5'- cGCGCCGccaGCGCcGCccagcccGCGG-GGCCGUc -3'
miRNA:   3'- -CGCGGCa--CGCGaCG-------UGCCuCUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 133591 0.67 0.656182
Target:  5'- cGCGCUG-GCGCUGCucACGGcccaccucgcgcuGGcGCUGUGg -3'
miRNA:   3'- -CGCGGCaCGCGACG--UGCC-------------UC-UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 15490 0.67 0.647211
Target:  5'- cGCGCCGcuCGCUGCGgGcGGGGCgUGUGu -3'
miRNA:   3'- -CGCGGCacGCGACGUgC-CUCUG-GCAC- -5'
23656 3' -60.1 NC_005261.1 + 28607 0.67 0.647211
Target:  5'- cGCGCCGa--GCUG-GCGGAG-CUGUGg -3'
miRNA:   3'- -CGCGGCacgCGACgUGCCUCuGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 29403 0.67 0.647211
Target:  5'- gGCgGCCGcGCGCUaCGCGGcGGCCGc- -3'
miRNA:   3'- -CG-CGGCaCGCGAcGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 50443 0.67 0.647211
Target:  5'- cGUGCgCGUGaaGCUGCGCcggcaGGAGACCa-- -3'
miRNA:   3'- -CGCG-GCACg-CGACGUG-----CCUCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 3504 0.67 0.647211
Target:  5'- cGCGCCGccaGCGCggccgccuccaGCGCGGcGGCCGc- -3'
miRNA:   3'- -CGCGGCa--CGCGa----------CGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 31582 0.67 0.647211
Target:  5'- cGCGCCGgacgugaGCGCgcucgGCGCGcAGGgCGUGc -3'
miRNA:   3'- -CGCGGCa------CGCGa----CGUGCcUCUgGCAC- -5'
23656 3' -60.1 NC_005261.1 + 54578 0.67 0.647211
Target:  5'- cGCGUCGgccaGCGCcgacUGCGCGGuGAgCGUc -3'
miRNA:   3'- -CGCGGCa---CGCG----ACGUGCCuCUgGCAc -5'
23656 3' -60.1 NC_005261.1 + 46678 0.67 0.637233
Target:  5'- -gGCCGcGCGCUcCACGGcGGCCGc- -3'
miRNA:   3'- cgCGGCaCGCGAcGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 115206 0.67 0.637233
Target:  5'- aGCGcCCGUGCGUc-CGCGGcgcGAUCGUGu -3'
miRNA:   3'- -CGC-GGCACGCGacGUGCCu--CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 118984 0.67 0.637233
Target:  5'- cGCGCUGUGCuuCUGCGuCGGGGcCUGcUGg -3'
miRNA:   3'- -CGCGGCACGc-GACGU-GCCUCuGGC-AC- -5'
23656 3' -60.1 NC_005261.1 + 54152 0.67 0.637233
Target:  5'- cGCgGCCGUGCGCgggguUGC-CGGgaAGACCa-- -3'
miRNA:   3'- -CG-CGGCACGCG-----ACGuGCC--UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 135642 0.67 0.637233
Target:  5'- uGCGCUGcuaccUGCGCggGCGCGGGcGGCCc-- -3'
miRNA:   3'- -CGCGGC-----ACGCGa-CGUGCCU-CUGGcac -5'
23656 3' -60.1 NC_005261.1 + 68148 0.67 0.637233
Target:  5'- cGCGCCGUGgccggcuacaCGC-GCGCGGAGcucgcgcgcGCCGc- -3'
miRNA:   3'- -CGCGGCAC----------GCGaCGUGCCUC---------UGGCac -5'
23656 3' -60.1 NC_005261.1 + 76128 0.67 0.637233
Target:  5'- cGCGCCG-GCGCccGuCGUGGAGGUCGUGg -3'
miRNA:   3'- -CGCGGCaCGCGa-C-GUGCCUCUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.