miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 60 0.67 0.667126
Target:  5'- gGgGCCGaaaucgGCGC-GCGCGGGGGCgGg- -3'
miRNA:   3'- -CgCGGCa-----CGCGaCGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 1169 0.68 0.597354
Target:  5'- cGCGCCGgcccGCGCcGCGgcCGG-GGCCGg- -3'
miRNA:   3'- -CGCGGCa---CGCGaCGU--GCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 1197 0.66 0.696776
Target:  5'- gGgGCCGgGCGCgGCGCGGAccccccGCCGa- -3'
miRNA:   3'- -CgCGGCaCGCGaCGUGCCUc-----UGGCac -5'
23656 3' -60.1 NC_005261.1 + 1737 0.66 0.706567
Target:  5'- cCGCgGUGCGCgggcccagGCGCGuGGccACCGUGu -3'
miRNA:   3'- cGCGgCACGCGa-------CGUGCcUC--UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 2548 0.73 0.339088
Target:  5'- aGCGCCGcgGCGCUGgGCGcGGGCgUGUGg -3'
miRNA:   3'- -CGCGGCa-CGCGACgUGCcUCUG-GCAC- -5'
23656 3' -60.1 NC_005261.1 + 2730 0.66 0.735547
Target:  5'- -gGCCGacuUGCGCuUGCgccGCGGcGGGCCGUc -3'
miRNA:   3'- cgCGGC---ACGCG-ACG---UGCC-UCUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 3342 0.66 0.706567
Target:  5'- cGCGCCGcgGCGCccgGCGCGccGGCCu-- -3'
miRNA:   3'- -CGCGGCa-CGCGa--CGUGCcuCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 3504 0.67 0.647211
Target:  5'- cGCGCCGccaGCGCggccgccuccaGCGCGGcGGCCGc- -3'
miRNA:   3'- -CGCGGCa--CGCGa----------CGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 3855 0.67 0.657178
Target:  5'- gGCGCCG-GCGCcGCGCGG---CCGg- -3'
miRNA:   3'- -CGCGGCaCGCGaCGUGCCucuGGCac -5'
23656 3' -60.1 NC_005261.1 + 13654 0.68 0.583466
Target:  5'- cGCGCCGUGcCGCcgccgcgggggggGCGCGGGGcgcgcgGgCGUGg -3'
miRNA:   3'- -CGCGGCAC-GCGa------------CGUGCCUC------UgGCAC- -5'
23656 3' -60.1 NC_005261.1 + 15490 0.67 0.647211
Target:  5'- cGCGCCGcuCGCUGCGgGcGGGGCgUGUGu -3'
miRNA:   3'- -CGCGGCacGCGACGUgC-CUCUG-GCAC- -5'
23656 3' -60.1 NC_005261.1 + 20246 0.66 0.735547
Target:  5'- cCGCCGcGCGCUcCAUGGGcGCCGa- -3'
miRNA:   3'- cGCGGCaCGCGAcGUGCCUcUGGCac -5'
23656 3' -60.1 NC_005261.1 + 22089 0.67 0.678038
Target:  5'- gGCGCCGcgugggggcgggaggGCGgUGUGCGGAgaGugCGUGc -3'
miRNA:   3'- -CGCGGCa--------------CGCgACGUGCCU--CugGCAC- -5'
23656 3' -60.1 NC_005261.1 + 23339 0.66 0.696776
Target:  5'- aGCGCgCG-GCGCaGCGCGcGcgugucGGCCGUGa -3'
miRNA:   3'- -CGCG-GCaCGCGaCGUGC-Cu-----CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 28607 0.67 0.647211
Target:  5'- cGCGCCGa--GCUG-GCGGAG-CUGUGg -3'
miRNA:   3'- -CGCGGCacgCGACgUGCCUCuGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 29240 0.66 0.706567
Target:  5'- aCGCCGcgGCGCcGCGCGacGGGCCGc- -3'
miRNA:   3'- cGCGGCa-CGCGaCGUGCc-UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 29403 0.67 0.647211
Target:  5'- gGCgGCCGcGCGCUaCGCGGcGGCCGc- -3'
miRNA:   3'- -CG-CGGCaCGCGAcGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 29848 0.69 0.528729
Target:  5'- cGCGCCGUGCucgccgGCcGCGCGGc-GCCGg- -3'
miRNA:   3'- -CGCGGCACG------CGaCGUGCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 30165 0.69 0.538381
Target:  5'- gGCGCCGcgcccgccGCGCUGCGCGccGAGGCgGc- -3'
miRNA:   3'- -CGCGGCa-------CGCGACGUGC--CUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 30374 0.69 0.538381
Target:  5'- cGCGCCGgGCGCcgcgGCGCGGGuGGagGUGg -3'
miRNA:   3'- -CGCGGCaCGCGa---CGUGCCU-CUggCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.