miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 31582 0.67 0.647211
Target:  5'- cGCGCCGgacgugaGCGCgcucgGCGCGcAGGgCGUGc -3'
miRNA:   3'- -CGCGGCa------CGCGa----CGUGCcUCUgGCAC- -5'
23656 3' -60.1 NC_005261.1 + 31681 0.66 0.706567
Target:  5'- -gGCCGcgGCGCgGCgGCGGcuGAUCGUGa -3'
miRNA:   3'- cgCGGCa-CGCGaCG-UGCCu-CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 31778 0.69 0.567674
Target:  5'- cGCGCCGcgGUGCUGCccGCGGcgcAGugCGc- -3'
miRNA:   3'- -CGCGGCa-CGCGACG--UGCC---UCugGCac -5'
23656 3' -60.1 NC_005261.1 + 31877 0.66 0.706567
Target:  5'- gGCGCCuucGCGC-GCGCcGAGGCCGc- -3'
miRNA:   3'- -CGCGGca-CGCGaCGUGcCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 31948 0.72 0.361898
Target:  5'- gGCGCCaacGUGCGCUaCACGGuGGCCa-- -3'
miRNA:   3'- -CGCGG---CACGCGAcGUGCCuCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 32245 0.66 0.745048
Target:  5'- uGCGCgGccGCGCUGC-UGGAG-CCGc- -3'
miRNA:   3'- -CGCGgCa-CGCGACGuGCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 33028 0.69 0.538381
Target:  5'- gGCGCCGaUGCGgaGCguccGCGGAGgGCCa-- -3'
miRNA:   3'- -CGCGGC-ACGCgaCG----UGCCUC-UGGcac -5'
23656 3' -60.1 NC_005261.1 + 33605 0.72 0.385753
Target:  5'- gGCGCCG-GCGCggGCgGCGGGGcCCGg- -3'
miRNA:   3'- -CGCGGCaCGCGa-CG-UGCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 33702 0.73 0.33172
Target:  5'- cGCGCgGggccCGCUGCACGaGGGGCgGUGg -3'
miRNA:   3'- -CGCGgCac--GCGACGUGC-CUCUGgCAC- -5'
23656 3' -60.1 NC_005261.1 + 34367 0.68 0.597354
Target:  5'- gGCGCCGcgcgGCGCcGCGCGcAGACgCGg- -3'
miRNA:   3'- -CGCGGCa---CGCGaCGUGCcUCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 35305 0.73 0.339088
Target:  5'- aGCGCCGggccGgGCUGCucGgGGAGGCCGg- -3'
miRNA:   3'- -CGCGGCa---CgCGACG--UgCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 36780 0.71 0.454208
Target:  5'- gGC-CCGUGCGUUGCGCcGAGACUuUGc -3'
miRNA:   3'- -CGcGGCACGCGACGUGcCUCUGGcAC- -5'
23656 3' -60.1 NC_005261.1 + 37001 0.66 0.725962
Target:  5'- aGC-CCGcGgGCUGCGCGG-GGCCa-- -3'
miRNA:   3'- -CGcGGCaCgCGACGUGCCuCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 37185 0.67 0.677047
Target:  5'- gGCGCUGcuggcgGCGCUGCugGCGGcGcuACUGUGg -3'
miRNA:   3'- -CGCGGCa-----CGCGACG--UGCCuC--UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 37239 0.72 0.393933
Target:  5'- gGCGCgGcGCGUggacaGCGCGGAGACCa-- -3'
miRNA:   3'- -CGCGgCaCGCGa----CGUGCCUCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 39895 0.67 0.677047
Target:  5'- cGCgGCUGUGCaGCUgGCGCGcGcGGCCGUc -3'
miRNA:   3'- -CG-CGGCACG-CGA-CGUGC-CuCUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 40226 0.71 0.454208
Target:  5'- aGCGUCGU-CGUcucugGCcCGGGGGCCGUGa -3'
miRNA:   3'- -CGCGGCAcGCGa----CGuGCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 43027 1.1 0.000975
Target:  5'- aGCGCCGUGCGCUGCACGGAGACCGUGa -3'
miRNA:   3'- -CGCGGCACGCGACGUGCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 43463 0.68 0.587428
Target:  5'- uCGCCGggcggGUGCUG-GCGGAGugCGa- -3'
miRNA:   3'- cGCGGCa----CGCGACgUGCCUCugGCac -5'
23656 3' -60.1 NC_005261.1 + 43586 0.66 0.731723
Target:  5'- uCGCCGUGCGCgacgccgucuccgGCGaGGAGGgCGa- -3'
miRNA:   3'- cGCGGCACGCGa------------CGUgCCUCUgGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.