miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 44260 0.66 0.735547
Target:  5'- aCGCCGcgGCGC-GCGgGGGGGCgGg- -3'
miRNA:   3'- cGCGGCa-CGCGaCGUgCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 44872 0.69 0.557859
Target:  5'- aGCGCCGccgcgaGCGCcGCGgGGAuGGCCGg- -3'
miRNA:   3'- -CGCGGCa-----CGCGaCGUgCCU-CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 45618 0.66 0.735547
Target:  5'- gGCGgCGcgGCGCgGCGCGGcGGGCCc-- -3'
miRNA:   3'- -CGCgGCa-CGCGaCGUGCC-UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 46678 0.67 0.637233
Target:  5'- -gGCCGcGCGCUcCACGGcGGCCGc- -3'
miRNA:   3'- cgCGGCaCGCGAcGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 47453 0.7 0.500179
Target:  5'- gGCGcCCGgccCGCuUGCGCGGGGGCUGg- -3'
miRNA:   3'- -CGC-GGCac-GCG-ACGUGCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 47674 0.69 0.538381
Target:  5'- aGCGCCGaGCGCaGCACGGccGCCc-- -3'
miRNA:   3'- -CGCGGCaCGCGaCGUGCCucUGGcac -5'
23656 3' -60.1 NC_005261.1 + 48318 0.66 0.707543
Target:  5'- cGCGUCGggcccgggcucggggGCGC-GCGCGGcgAGGCCGa- -3'
miRNA:   3'- -CGCGGCa--------------CGCGaCGUGCC--UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 48809 0.66 0.735547
Target:  5'- -gGCCGUGCGCgGCGucCGcGAcGCCGUc -3'
miRNA:   3'- cgCGGCACGCGaCGU--GC-CUcUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 49481 0.66 0.735547
Target:  5'- -gGCCGcGCggaaGCUGCAgcagaGGAGGCCGg- -3'
miRNA:   3'- cgCGGCaCG----CGACGUg----CCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 50443 0.67 0.647211
Target:  5'- cGUGCgCGUGaaGCUGCGCcggcaGGAGACCa-- -3'
miRNA:   3'- -CGCG-GCACg-CGACGUG-----CCUCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 51386 0.68 0.597354
Target:  5'- -gGCCGUGCGCgaacuccGCgaGCGGAGcCCGc- -3'
miRNA:   3'- cgCGGCACGCGa------CG--UGCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 52341 0.69 0.548093
Target:  5'- gGCGCCcgccGCGCUGCcgcCGGAG-CCGg- -3'
miRNA:   3'- -CGCGGca--CGCGACGu--GCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 52970 0.69 0.538381
Target:  5'- cGCGCCGgugcgGCGCcgGCagGCGGGGGCgGc- -3'
miRNA:   3'- -CGCGGCa----CGCGa-CG--UGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 53108 0.7 0.463223
Target:  5'- aGCGCCGcgGCGCUGCGCGcc-GCCa-- -3'
miRNA:   3'- -CGCGGCa-CGCGACGUGCcucUGGcac -5'
23656 3' -60.1 NC_005261.1 + 53297 0.67 0.637233
Target:  5'- aGCGCCcccGUGCGCggGuCGaucaGGAGGCCGc- -3'
miRNA:   3'- -CGCGG---CACGCGa-C-GUg---CCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 53587 0.66 0.734593
Target:  5'- cGgGCCGgcgGCGCcccaGCGGAccgacgaGGCCGUGg -3'
miRNA:   3'- -CgCGGCa--CGCGacg-UGCCU-------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 54053 0.69 0.528729
Target:  5'- cGCGCgGUGCGCUucgguaGUGCGGucgaAGGCCGc- -3'
miRNA:   3'- -CGCGgCACGCGA------CGUGCC----UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 54152 0.67 0.637233
Target:  5'- cGCgGCCGUGCGCgggguUGC-CGGgaAGACCa-- -3'
miRNA:   3'- -CG-CGGCACGCG-----ACGuGCC--UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 54578 0.67 0.647211
Target:  5'- cGCGUCGgccaGCGCcgacUGCGCGGuGAgCGUc -3'
miRNA:   3'- -CGCGGCa---CGCG----ACGUGCCuCUgGCAc -5'
23656 3' -60.1 NC_005261.1 + 55034 0.71 0.445289
Target:  5'- cCGCCGgccccgcGCaGCUGCGCGG-GGCCGg- -3'
miRNA:   3'- cGCGGCa------CG-CGACGUGCCuCUGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.