miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 57787 0.73 0.354177
Target:  5'- cGCGgCGUcGCGCggcggGCGCGcGAaGGCCGUGa -3'
miRNA:   3'- -CGCgGCA-CGCGa----CGUGC-CU-CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 58264 0.69 0.557859
Target:  5'- cGCGCCGcgcucgccGCGCU-CACGG-GGCCGg- -3'
miRNA:   3'- -CGCGGCa-------CGCGAcGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 58784 0.71 0.445289
Target:  5'- cGCGCCGgccaGCGC-GCGCaGGAaGGCCGg- -3'
miRNA:   3'- -CGCGGCa---CGCGaCGUG-CCU-CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 59416 0.7 0.500179
Target:  5'- gGCGCCG-GCGCUGuCGCGcGGcCCGg- -3'
miRNA:   3'- -CGCGGCaCGCGAC-GUGCcUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 61121 0.8 0.117937
Target:  5'- uGCGCCGUGCGCUGCuucGCGcaagucauGGCCGUGc -3'
miRNA:   3'- -CGCGGCACGCGACG---UGCcu------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 63367 0.67 0.666133
Target:  5'- gGCGCgGUGCGggugUGC-CGGGucgcccuGGCCGUGg -3'
miRNA:   3'- -CGCGgCACGCg---ACGuGCCU-------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 63551 0.7 0.472332
Target:  5'- cGCGCCGUGCccGCUgGCGCGGccggcaugauGGGCCc-- -3'
miRNA:   3'- -CGCGGCACG--CGA-CGUGCC----------UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 63731 0.66 0.725962
Target:  5'- aGCGgCGUGCGCaugGCcgcgGCGGcguAGGCCGc- -3'
miRNA:   3'- -CGCgGCACGCGa--CG----UGCC---UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 64098 0.66 0.696776
Target:  5'- gGCGCCcacaaaGUGCgGCACGGGcGGCaCGUGc -3'
miRNA:   3'- -CGCGGca----CGCGaCGUGCCU-CUG-GCAC- -5'
23656 3' -60.1 NC_005261.1 + 64831 0.68 0.597354
Target:  5'- cGCGCCGgguccgcGCGCUGCAgCGccauGACCGc- -3'
miRNA:   3'- -CGCGGCa------CGCGACGU-GCcu--CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 66299 0.66 0.745048
Target:  5'- uGCGUCaG-GCGCgGCACGGccaccgaggcGGCCGUGc -3'
miRNA:   3'- -CGCGG-CaCGCGaCGUGCCu---------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 66619 0.66 0.735547
Target:  5'- gGCGCgCGUGCGCaugGC-CGacGAGACCu-- -3'
miRNA:   3'- -CGCG-GCACGCGa--CGuGC--CUCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 68083 0.68 0.627251
Target:  5'- uCGCCc-GCGgggGCGgGGAGGCCGUGa -3'
miRNA:   3'- cGCGGcaCGCga-CGUgCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 68148 0.67 0.637233
Target:  5'- cGCGCCGUGgccggcuacaCGC-GCGCGGAGcucgcgcgcGCCGc- -3'
miRNA:   3'- -CGCGGCAC----------GCGaCGUGCCUC---------UGGCac -5'
23656 3' -60.1 NC_005261.1 + 68269 0.68 0.577533
Target:  5'- cGCGCC-UGCGCccGCGCGGcgGGGCCc-- -3'
miRNA:   3'- -CGCGGcACGCGa-CGUGCC--UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 68670 0.69 0.548093
Target:  5'- cGCGCCGccgGCGUccgccGCGUGGGGGCCGg- -3'
miRNA:   3'- -CGCGGCa--CGCGa----CGUGCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 68757 0.7 0.463223
Target:  5'- cCGCCGggGCGC--CGCGGAGccGCCGUGu -3'
miRNA:   3'- cGCGGCa-CGCGacGUGCCUC--UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 68879 0.86 0.049962
Target:  5'- uGCGCCGUcguGCGCUGCGCGGAcGCCGUc -3'
miRNA:   3'- -CGCGGCA---CGCGACGUGCCUcUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 69423 0.74 0.310326
Target:  5'- cGCGCCG-GCGCauCACGGAGACgGg- -3'
miRNA:   3'- -CGCGGCaCGCGacGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 69538 0.66 0.735547
Target:  5'- gGCGCUG-GCGCgcGCGCuGGGGACgGc- -3'
miRNA:   3'- -CGCGGCaCGCGa-CGUG-CCUCUGgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.