miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 70340 0.68 0.617272
Target:  5'- cGCGUCGaGCGg-GC-CGGGGACCGg- -3'
miRNA:   3'- -CGCGGCaCGCgaCGuGCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 70474 0.66 0.725962
Target:  5'- cGCGCCGcgggUGCGC-GCGCGuGAG-CaCGUa -3'
miRNA:   3'- -CGCGGC----ACGCGaCGUGC-CUCuG-GCAc -5'
23656 3' -60.1 NC_005261.1 + 70641 0.69 0.557859
Target:  5'- aGCGCCGcgGCGCUGagguucggcgcCGCGGccgcGGGCCGc- -3'
miRNA:   3'- -CGCGGCa-CGCGAC-----------GUGCC----UCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 70872 0.67 0.677047
Target:  5'- cCGCCGUgGCGUgGCcgGCGGugcacauGGCCGUGc -3'
miRNA:   3'- cGCGGCA-CGCGaCG--UGCCu------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 71959 0.7 0.500179
Target:  5'- gGCGUCG-GCGCgggGCGCGGAGcGCgCGg- -3'
miRNA:   3'- -CGCGGCaCGCGa--CGUGCCUC-UG-GCac -5'
23656 3' -60.1 NC_005261.1 + 73392 0.67 0.667126
Target:  5'- cGCGCgCGUGCaGCaccagGUACGG-GGCCGc- -3'
miRNA:   3'- -CGCG-GCACG-CGa----CGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 73648 0.66 0.716299
Target:  5'- cGCGCCGUccagguagacGCGCacGaCGCGGAGGgCGg- -3'
miRNA:   3'- -CGCGGCA----------CGCGa-C-GUGCCUCUgGCac -5'
23656 3' -60.1 NC_005261.1 + 73726 0.7 0.500179
Target:  5'- uCGgCGUGCGCgcuugcGCGCGGGGGuCCGg- -3'
miRNA:   3'- cGCgGCACGCGa-----CGUGCCUCU-GGCac -5'
23656 3' -60.1 NC_005261.1 + 74702 0.67 0.686933
Target:  5'- -gGCCGccGCGCggGCGCGGAaccgGGCCGc- -3'
miRNA:   3'- cgCGGCa-CGCGa-CGUGCCU----CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 74948 0.66 0.696776
Target:  5'- gGCGCgG-GCGCgcucgGCGCGcucGAGGCCGc- -3'
miRNA:   3'- -CGCGgCaCGCGa----CGUGC---CUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 75472 0.7 0.458704
Target:  5'- gGCGCCGggcggcgGCGCgggccgcuacgaGCGCGGGGcgcuggaggcgcacGCCGUGg -3'
miRNA:   3'- -CGCGGCa------CGCGa-----------CGUGCCUC--------------UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 76128 0.67 0.637233
Target:  5'- cGCGCCG-GCGCccGuCGUGGAGGUCGUGg -3'
miRNA:   3'- -CGCGGCaCGCGa-C-GUGCCUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 76166 0.7 0.499239
Target:  5'- aCGCCGUgGCGCUGCaguacgaGCGGGGcCUGg- -3'
miRNA:   3'- cGCGGCA-CGCGACG-------UGCCUCuGGCac -5'
23656 3' -60.1 NC_005261.1 + 76217 0.66 0.696776
Target:  5'- cGCGCC-UGCGCcGCGCGcuugacGAGACgCGg- -3'
miRNA:   3'- -CGCGGcACGCGaCGUGC------CUCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 76470 0.71 0.445289
Target:  5'- gGCGCCG-GCGCgcGCGCGGAccCCGa- -3'
miRNA:   3'- -CGCGGCaCGCGa-CGUGCCUcuGGCac -5'
23656 3' -60.1 NC_005261.1 + 76860 0.73 0.317339
Target:  5'- cGCGCCGccugGCGCccgGCGaGGAGGCCGa- -3'
miRNA:   3'- -CGCGGCa---CGCGa--CGUgCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 76912 0.7 0.500179
Target:  5'- cGCGCUGUGCG-UGCugGGccGCCGc- -3'
miRNA:   3'- -CGCGGCACGCgACGugCCucUGGCac -5'
23656 3' -60.1 NC_005261.1 + 77074 0.75 0.257867
Target:  5'- gGUGCCGcgcgagGCGCUgGCGCGGAcgcugcucucgacGGCCGUGa -3'
miRNA:   3'- -CGCGGCa-----CGCGA-CGUGCCU-------------CUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 77664 0.7 0.463223
Target:  5'- gGCGCCugcagGCGCaggGCGCGGAcgGGCCGg- -3'
miRNA:   3'- -CGCGGca---CGCGa--CGUGCCU--CUGGCac -5'
23656 3' -60.1 NC_005261.1 + 80047 0.69 0.538381
Target:  5'- cCGCCGUcgccacugGCgGCggGCGCGGGGGgCGUGg -3'
miRNA:   3'- cGCGGCA--------CG-CGa-CGUGCCUCUgGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.