miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23656 3' -60.1 NC_005261.1 + 137743 0.67 0.667126
Target:  5'- gGgGCCGaaaucgGCGC-GCGCGGGGGCgGg- -3'
miRNA:   3'- -CgCGGCa-----CGCGaCGUGCCUCUGgCac -5'
23656 3' -60.1 NC_005261.1 + 135760 0.72 0.359569
Target:  5'- cGCGCgGUGCGCUccggcgcagaGCGCgugccgcugucggaGGuGACCGUGg -3'
miRNA:   3'- -CGCGgCACGCGA----------CGUG--------------CCuCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 135642 0.67 0.637233
Target:  5'- uGCGCUGcuaccUGCGCggGCGCGGGcGGCCc-- -3'
miRNA:   3'- -CGCGGC-----ACGCGa-CGUGCCU-CUGGcac -5'
23656 3' -60.1 NC_005261.1 + 134994 0.66 0.706567
Target:  5'- cCGCCGggGCGCcccugGCGCGGcGGGCCc-- -3'
miRNA:   3'- cGCGGCa-CGCGa----CGUGCC-UCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 134522 0.67 0.686933
Target:  5'- uGCGCC-UGCaGCUGCugGGcgcgcAGAC-GUGa -3'
miRNA:   3'- -CGCGGcACG-CGACGugCC-----UCUGgCAC- -5'
23656 3' -60.1 NC_005261.1 + 133819 0.69 0.548093
Target:  5'- gGCGaCGagGCGCUGCGCGGccgcgugcgcGCCGUGg -3'
miRNA:   3'- -CGCgGCa-CGCGACGUGCCuc--------UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 133591 0.67 0.656182
Target:  5'- cGCGCUG-GCGCUGCucACGGcccaccucgcgcuGGcGCUGUGg -3'
miRNA:   3'- -CGCGGCaCGCGACG--UGCC-------------UC-UGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 132632 0.66 0.725962
Target:  5'- gGCGCCGagGaCGCggGCGCGGcGGCCc-- -3'
miRNA:   3'- -CGCGGCa-C-GCGa-CGUGCCuCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 132161 0.69 0.557859
Target:  5'- cGCGCCGc-CGCUGCaggcagcgcggGCGGGGGCCc-- -3'
miRNA:   3'- -CGCGGCacGCGACG-----------UGCCUCUGGcac -5'
23656 3' -60.1 NC_005261.1 + 132081 0.71 0.454208
Target:  5'- cCGCCGUcGcCGCUGcCGCGGAGGgCGg- -3'
miRNA:   3'- cGCGGCA-C-GCGAC-GUGCCUCUgGCac -5'
23656 3' -60.1 NC_005261.1 + 127305 0.66 0.705591
Target:  5'- cCGCCGgcugGCGgUGgggcccugccgccCGCGGGGGCCGg- -3'
miRNA:   3'- cGCGGCa---CGCgAC-------------GUGCCUCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 126951 0.68 0.6083
Target:  5'- gGCGCCGggcgcgggggcggcaGCGCgaaccGCGCGGgggacGGACCGUc -3'
miRNA:   3'- -CGCGGCa--------------CGCGa----CGUGCC-----UCUGGCAc -5'
23656 3' -60.1 NC_005261.1 + 126382 0.66 0.735547
Target:  5'- uGCGCCuG-GCuCUGCugGGAGugCa-- -3'
miRNA:   3'- -CGCGG-CaCGcGACGugCCUCugGcac -5'
23656 3' -60.1 NC_005261.1 + 125366 0.66 0.696776
Target:  5'- cCGCCGggcagagggGCGCUGgaACGG-GugCGUGc -3'
miRNA:   3'- cGCGGCa--------CGCGACg-UGCCuCugGCAC- -5'
23656 3' -60.1 NC_005261.1 + 121787 0.66 0.716299
Target:  5'- cGCgGCCGgcGgGCUGgGCaGGGGGCgCGUGg -3'
miRNA:   3'- -CG-CGGCa-CgCGACgUG-CCUCUG-GCAC- -5'
23656 3' -60.1 NC_005261.1 + 121169 0.67 0.686933
Target:  5'- uGC-CCGgGCGCucggUGCACGG-GGCCGg- -3'
miRNA:   3'- -CGcGGCaCGCG----ACGUGCCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 121106 0.69 0.546146
Target:  5'- -gGCCGUGCGgguccucuaggGCGCGGAGGCgCGg- -3'
miRNA:   3'- cgCGGCACGCga---------CGUGCCUCUG-GCac -5'
23656 3' -60.1 NC_005261.1 + 121066 0.7 0.509623
Target:  5'- cGCGCgGUGUGCgcgGCGCcGGcGGCCGc- -3'
miRNA:   3'- -CGCGgCACGCGa--CGUG-CCuCUGGCac -5'
23656 3' -60.1 NC_005261.1 + 119561 0.78 0.155609
Target:  5'- gGgGCCGcaaguggaUGCGCUGCgaGCGcGAGACCGUGg -3'
miRNA:   3'- -CgCGGC--------ACGCGACG--UGC-CUCUGGCAC- -5'
23656 3' -60.1 NC_005261.1 + 118984 0.67 0.637233
Target:  5'- cGCGCUGUGCuuCUGCGuCGGGGcCUGcUGg -3'
miRNA:   3'- -CGCGGCACGc-GACGU-GCCUCuGGC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.